Browse Element(s) Details


OsAffx.24249.1.S1_at

Description tigr:9630.m01346
TID=OsAffx.24249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1448010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14450OsAffx.24247.1.S1_at10/112+7952133..7953676hypothetical protein
LOC_Os02g14460NANA2+7959781..7960983Peroxidase 52 precursor, putative
LOC_Os02g14470OsAffx.24248.1.S1_at11/112+7964708..7965138hypothetical protein
LOC_Os02g14480OsAffx.24249.1.S1_at10/112+7975700..7978621Leucine Rich Repeat family protein, expressed
LOC_Os02g14490OsAffx.2608.1.S1_at11/112+7986052..7988629myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os02g14500OsAffx.32134.3.S1_at3/112+7993024..7996668expressed protein
LOC_Os02g14510NANA2+7997538..7997864hypothetical protein
LOC_Os02g14520Os.52305.1.S1_at1/112+7998421..8002013transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24249.1.S1_at--1137--1311Chr02:7976204..7976228 (25 bp)
AGAGGCCTTCGATGCAGCAGGTAGT
LOC_Os02g14480
OsAffx.24249.1.S1_at--287--9091NONE
TGCTCAAGGACATCAGGGCCGGCGC
NONE
OsAffx.24249.1.S1_at--422--6011Chr02:7976087..7976111 (25 bp)
GAGAGAACACGCACAGTTTCTCCAT
LOC_Os02g14480
OsAffx.24249.1.S1_at--732--6831Chr02:7976072..7976096 (25 bp)
GTTTCTCCATCGTGGATAGCTGCAT
LOC_Os02g14480
OsAffx.24249.1.S1_at--1074--9991Chr02:7976056..7976080 (25 bp)
TAGCTGCATCATATCCAATCCAATC
LOC_Os02g14480
OsAffx.24249.1.S1_at--570--6091Chr02:7975932..7975956 (25 bp)
GAGTAATTTCTTGTCTTGTGCTTCG
LOC_Os02g14480
OsAffx.24249.1.S1_at--818--4031Chr02:7975909..7975933 (25 bp)
CGTTGCTGCTGGACTACTGGTAGTA
LOC_Os02g14480
OsAffx.24249.1.S1_at--743--511Chr02:7975880..7975904 (25 bp)
ATCGATCGCTTTATTGGTTGGTACA
LOC_Os02g14480
OsAffx.24249.1.S1_at--969--1331Chr02:7975789..7975813 (25 bp)
AGAGGGTTTCGTTTTGATTGCACAA
LOC_Os02g14480
OsAffx.24249.1.S1_at--1160--51Chr02:7975773..7975797 (25 bp)
ATTGCACAAAGCCTGCCATTTTGGC
LOC_Os02g14480
OsAffx.24249.1.S1_at--114--3411Chr02:7975717..7975741 (25 bp)
CAGCATGCAGCATCATTGTAGCCAA
LOC_Os02g14480
Target Sequence 
AGAGGCCTTCGATGCAGCAGGTAGTGGGGGTGCTCAAGGACATCAGGGCCGGCGCCTCCTCCTCCCGCTGGAGGCGCCGG
CGAGACGCCATGATGGAGACGACGATGACGGTGCACGCGAGAGAACACGCACAGTTTCTCCATCGTGGATAGCTGCATCA
TATCCAATCCAATCGATGTATCAAAATCCAGGAGGGGATTCGATCGGAGCCAGCCGGGAGAGGTGAGGTGATCTTTTGGT
CAGTAAAATAAATAATGCTTTCGTTGGGTGGAGGAGTAATTTCTTGTCTTGTGCTTCGTTGCTGCTGGACTACTGGTAGT
AGGAGATCGATCGCTTTATTGGTTGGTACAACAACTTTTGCGTAGTGATAGGAGTAGCCAGTAGCTAGAGTGTTGTTGTG
GTGTACTTTGATCATGAGAGGGTTTCGTTTTGATTGCACAAAGCCTGCCATTTTGGCATCAACGAGAAATGGAGACAAGT
TGGAAGTACAGCATGCAGCATCATTGTAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis