Browse Element(s) Details


OsAffx.2608.1.S1_at

Description tigr:9630.m01347
TID=OsAffx.2608.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1449011/11myb-like DNA-binding domain, SHAQKYF class family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14470OsAffx.24248.1.S1_at11/112+7964708..7965138hypothetical protein
LOC_Os02g14480OsAffx.24249.1.S1_at10/112+7975700..7978621Leucine Rich Repeat family protein, expressed
LOC_Os02g14490OsAffx.2608.1.S1_at11/112+7986052..7988629myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os02g14500OsAffx.32134.3.S1_at3/112+7993024..7996668expressed protein
LOC_Os02g14510NANA2+7997538..7997864hypothetical protein
LOC_Os02g14520Os.52305.1.S1_at1/112+7998421..8002013transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g14530Os.8740.1.S1_at10/112+8004992..8017327protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2608.1.S1_at--543--511Chr02:7987791..7987815 (25 bp)
ATCGTCTTCCGTTTGGATGGCACGC
LOC_Os02g14490
OsAffx.2608.1.S1_at--1018--4691Chr02:7987833..7987857 (25 bp)
GCGGCGGTAATAAGAACAGGTCGTC
LOC_Os02g14490
OsAffx.2608.1.S1_at--284--9791Chr02:7987843..7987867 (25 bp)
TAAGAACAGGTCGTCGTCGGATCCC
LOC_Os02g14490
OsAffx.2608.1.S1_at--651--7191Chr02:7987858..7987882 (25 bp)
GTCGGATCCCGTGGTGATCGATGAA
LOC_Os02g14490
OsAffx.2608.1.S1_at--1031--7391Chr02:7987871..7987895 (25 bp)
GTGATCGATGAAGCCCTAGATTCCC
LOC_Os02g14490
OsAffx.2608.1.S1_at--332--4971Chr02:7988191..7988215 (25 bp)
GCATCAGCAGAAGCATGTAGAACAA
LOC_Os02g14490
OsAffx.2608.1.S1_at--706--8731Chr02:7988206..7988230 (25 bp)
TGTAGAACAACCAAGGATGACTCCG
LOC_Os02g14490
OsAffx.2608.1.S1_at--833--4391Chr02:7988339..7988363 (25 bp)
GCCAAGAGGAGCAAGACGTCAACGA
LOC_Os02g14490
OsAffx.2608.1.S1_at--180--4151Chr02:7988380..7988404 (25 bp)
CGCCGCCATTTCAGGCGAGCAAGAA
LOC_Os02g14490
OsAffx.2608.1.S1_at--103--5391Chr02:7988410..7988434 (25 bp)
GAAGAATATGGATCGCTGCAAGAAC
LOC_Os02g14490
OsAffx.2608.1.S1_at--785--9491Chr02:7988493..7988517 (25 bp)
TCTCCTCCATGGATTTGTCCATGGA
LOC_Os02g14490
Target Sequence 
ATCGTCTTCCGTTTGGATGGCACGCCGGCGGCGGCGGCGGCGGCGGCGGTAATAAGAACAGGTCGTCGTCGGATCCCGTG
GTGATCGATGAAGCCCTAGATTCCCGCCGCCTCGAGCATCAGCAGAAGCATGTAGAACAACCAAGGATGACTCCGACGAC
GACGACCACACCGGCCGGCAAGCGGCCACCGGAGTGGTCACCACCGGACCTGCAGCTCACCTTGTCTCCGACGACCGCCC
CCGCGGCCGCAGACGGCGGCGGGGCCAAGAGGAGCAAGACGTCAACGACGACGACGAACACCACCGCCGCCATTTCAGGC
GAGCAAGAAGCAGAGAAGAATATGGATCGCTGCAAGAACAAGCTGTCCATCTCGCTCTCGCTCTCGCCGCCGGCAGCAGC
AGCAGCAGCGGCGAACTTCTCCTCCATGGATTTGTCCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis