Browse Element(s) Details


Os.15551.1.S1_at

Description gb:AK059480.1
DB_XREF= gi:32969498
TID=Os.15551.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F04, full insert sequence.
FL= gb:AK059480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3407010/11DCN1-like protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34060Os.5676.1.S2_at11/118+21204797..21221734expressed protein
LOC_Os08g34060Os.5676.1.S1_at11/118+21204797..21221734expressed protein
LOC_Os08g34070Os.15551.1.S1_at10/118+21222562..21227896DCN1-like protein 4, putative, expressed
LOC_Os08g34080Os.53479.1.S1_x_at1/118+21232212..21234704retrotransposon protein, putative, unclassified
LOC_Os08g34080OsAffx.31069.2.S1_x_at1/118+21232212..21234704retrotransposon protein, putative, unclassified
LOC_Os08g34080OsAffx.17106.1.S1_x_at1/118+21232212..21234704retrotransposon protein, putative, unclassified
LOC_Os08g34090OsAffx.20387.1.S1_x_at2/118+21235631..21241630retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g34100OsAffx.29502.2.S1_at11/118+21248357..21249162hypothetical protein
LOC_Os08g34100OsAffx.29502.2.S1_x_at11/118+21248357..21249162hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15551.1.S1_at--688--10731Chr08:21226802..21226826 (25 bp)
TTGCTTGGCCTCTTATTTTGGACAA
LOC_Os08g34070
Os.15551.1.S1_at--680--4811Chr08:21226860..21226884 (25 bp)
GCTCTCTTTTATTCAAGTGCTGGTG
LOC_Os08g34070
Os.15551.1.S1_at--671--9711NONE
TCAAGAATGCTTTCAGCACCTTGGG
NONE
Os.15551.1.S1_at--603--10371Chr08:21227476..21227500 (25 bp)
TTTTCATAGTTCTGTGGTGGAGGCT
LOC_Os08g34070
Os.15551.1.S1_at--562--8831Chr08:21227511..21227535 (25 bp)
TGATCATTCAATCGCCTTCTTATCT
LOC_Os08g34070
Os.15551.1.S1_at--254--3051Chr08:21227520..21227544 (25 bp)
AATCGCCTTCTTATCTTGTCTTTTT
LOC_Os08g34070
Os.15551.1.S1_at--232--10551Chr08:21227543..21227567 (25 bp)
TTCTTTCCCCATTTTTGAAGCTAGA
LOC_Os08g34070
Os.15551.1.S1_at--682--4871Chr08:21227714..21227738 (25 bp)
GCTATGTTGTTTGCTACCTCTTCTC
LOC_Os08g34070
Os.15551.1.S1_at--375--1751Chr08:21227729..21227753 (25 bp)
ACCTCTTCTCCCTTGCTTAGAAGAA
LOC_Os08g34070
Os.15551.1.S1_at--597--8771Chr08:21227812..21227836 (25 bp)
TGTATAGGTTTATTCATCAGCAGCT
LOC_Os08g34070
Os.15551.1.S1_at--315--3551Chr08:21227826..21227850 (25 bp)
CATCAGCAGCTACCGACTATGAAAA
LOC_Os08g34070
Target Sequence 
TTGCTTGGCCTCTTATTTTGGACAATTTTGTTGAATGGTTACGAGAAAATAAAAGTTAGCTCTCTTTTATTCAAGTGCTG
GTGAAGATGTGGTTCAAATGTAGTATTCAAGAATGCTTTCAGCACCTTGGGGGGCCTCTGAAGGATGCAATTTCAGTTTT
CATAGTTCTGTGGTGGAGGCTGGTTTCAGNATGATCATTCAATCGCCTTCTTATCTTGTCTTTTTCTTTCCCCATTTTTG
AAGCTAGAAAAAAAAAAGTTTGAAGAGATGTCATCTTGAAATTTTGCTTGGATATGCTCTATATTTGTGAGACTCAATGC
TATTATTGCANTTGGATGGGTTTTTTTTAGGTATAGCTTCAAAAGCATGGAAATTGGCTGAGAAAGGCATGTGTAGCTAT
GTTGTTTGCTACCTCTTCTCCCTTGCTTAGAAGAACAGACACCCCCATGTCCTTTATTTGTGTACCCCCGTTATTTTAGG
GGATATTTCATTCTGTATAGGTTTATTCATCAGCAGCTACCGACTATGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis