Browse Element(s) Details


Os.15575.1.S1_at

Description gb:AK121857.1
DB_XREF= gi:37991480
TID=Os.15575.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.15575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102I02, full insert sequence.
FL= gb:AK100342.1 gb:AK121857.1 gb:AK065990.1 gb:AK059698.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5769011/11Aldehyde oxidase 1, putative, expressed
LOC_Os03g576805/11Aldehyde oxidase 1, putative, expressed
LOC_Os03g577203/11aldehyde oxidase-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57660Os.18145.1.S1_x_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57660OsAffx.13530.1.S1_at11/113+32798345..32805479glutamate carboxypeptidase II, putative, expressed
LOC_Os03g57670NANA3+32806571..32807937LOB domain protein 4, putative
LOC_Os03g57680Os.15575.1.S1_at5/113+32808297..32816140Aldehyde oxidase 1, putative, expressed
LOC_Os03g57690Os.15575.1.S1_at11/113+32818329..32825391Aldehyde oxidase 1, putative, expressed
LOC_Os03g57720Os.15575.1.S1_at3/113+32836339..32837447aldehyde oxidase-2, putative, expressed
LOC_Os03g57730OsAffx.3634.1.S1_at11/113+32841829..32842334Plastocyanin-like domain containing protein
LOC_Os03g57740OsAffx.13533.1.S1_at11/113+32846035..32846671Plastocyanin-like domain containing protein
LOC_Os03g57750OsAffx.3635.1.S1_s_at11/113+32848914..32849682expressed protein
LOC_Os03g57760OsAffx.25746.1.S1_x_at11/113+32850137..3285409225.3 kDa vesicle transport protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009688biological_processabscisic acid biosynthesis
GO:0009851biological_processauxin biosynthesis
GO:0004031molecular_functionaldehyde oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15575.1.S1_at--179--4593Chr03:32837296..32837320 (25 bp)
GCGCATTCGTGCAAGGGATCGGCTT
LOC_Os03g57720
Os.15575.1.S1_at--118--114Chr03:32837292..32837316 (25 bp)
ATTCGTGCAAGGGATCGGCTTCTTC
LOC_Os03g57720
Os.15575.1.S1_at--791--5114Chr03:32837286..32837310 (25 bp)
GCAAGGGATCGGCTTCTTCACGAAC
LOC_Os03g57720
Os.15575.1.S1_at--551--2473Chr03:33195351..33195375 (25 bp)
AACAGCGCCCGCGATCACAAGCGCG
NONE
Os.15575.1.S1_at--464--6051Chr03:32818509..32818533 (25 bp)
GAGATATCTCGAGAGCTTTGCTGCC
LOC_Os03g57690
Os.15575.1.S1_at--832--2631Chr03:32818483..32818507 (25 bp)
AAGCCTAGAGATAGAAGGGTTCTTT
LOC_Os03g57690
Os.15575.1.S1_at--1064--5311Chr03:32818470..32818494 (25 bp)
GAAGGGTTCTTTGGCTTAGCTTTGT
LOC_Os03g57690
Os.15575.1.S1_at--835--7671Chr03:32818467..32818491 (25 bp)
GGGTTCTTTGGCTTAGCTTTGTATA
LOC_Os03g57690
Os.15575.1.S1_at--320--10231Chr03:32818461..32818485 (25 bp)
TTTGGCTTAGCTTTGTATAAACACC
LOC_Os03g57690
Os.15575.1.S1_at--1070--8291Chr03:32818458..32818482 (25 bp)
GGCTTAGCTTTGTATAAACACCAAC
LOC_Os03g57690
Os.15575.1.S1_at--172--6534Chr05:1245463..1245490 (24 bp)
GATTTGTGTTGATGTGGTATATATG
NONE
Target Sequence 
GCGCATTCGTGCAAGGGATCGGCTTCTTCACGAACGAGGAGTACACGACCAACTCCGATGGGCTGGTCATCNACGACNGC
ACGTGGACGTACAAGATCCCCACCGTGGACACCATCCCCAAGCAGTTCAACGTCGAGCTCATCAACAGCGCCCGCGATCA
CAAGCGCGTCCTCTCCTCCAAAGCGTCCGGTGAGCCNCCGCTGCTGCTGGCGTCGTCGGTGCACTGCGCGATGAGGGAGG
CGATCAGGGCGGCCAGGAAGGAGTTCGCCGGCGCCGGAGGCTCGCCGCTGACGTTCCAGATGGACGTGCCGGCGACGATG
CCGATCGTCAAGGAGCTCTGCGGCCTNGACGTCGTGGAGAGATATCTCGAGAGCTTTGCTGCCNAAGCCTAGAGATAGAA
GGGTTCTTTGGCTTAGCTTTGTATAAACACCAACAATAATCTGNGCCTGGATTTGTGTTGATGTGGTATATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis