Browse Element(s) Details


Os.15692.1.S1_at

Description gb:AK069017.1
DB_XREF= gi:32979041
TID=Os.15692.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (OSJNBb0042N11.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170D06, full insert sequence.
FL= gb:AK069017.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3976011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39720OsAffx.15352.1.S1_s_at11/113+22054288..22055579transposon protein, putative, unclassified
LOC_Os03g39720OsAffx.15352.1.S1_x_at11/113+22054288..22055579transposon protein, putative, unclassified
LOC_Os03g39730NANA3+22058377..22059737hypothetical protein
LOC_Os03g39740Os.33081.1.S1_at11/113+22065048..22071100expressed protein
LOC_Os03g39760Os.15692.1.S1_at11/113+22077957..22080213Cytochrome P450 family protein, expressed
LOC_Os03g39780OsAffx.22686.1.S1_at11/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39780OsAffx.20729.1.S1_x_at1/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39790OsAffx.10456.1.S1_at10/113+22090428..22092843retrotransposon protein, putative, unclassified
LOC_Os03g39820Os.45903.1.S1_at11/113+22102594..22104416expressed protein
LOC_Os03g39830Os.18384.1.S1_at11/113+22105006..22106227expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15692.1.S1_at--853--10571Chr03:22079644..22079668 (25 bp)
TTCTACCTCGAGAATGCCGTGAGCA
LOC_Os03g39760
Os.15692.1.S1_at--257--8911Chr03:22079663..22079687 (25 bp)
TGAGCAGTGCAACGTCATGGGCTAC
LOC_Os03g39760
Os.15692.1.S1_at--1110--271Chr03:22079679..22079703 (25 bp)
ATGGGCTACGACATAACCGAAGGAA
LOC_Os03g39760
Os.15692.1.S1_at--628--8171Chr03:22079700..22079724 (25 bp)
GGAACTCGAGTGCTTGTAAATGCTT
LOC_Os03g39760
Os.15692.1.S1_at--477--11Chr03:22079754..22079778 (25 bp)
GAGGATCCCGAGATTTTTAAACCAG
LOC_Os03g39760
Os.15692.1.S1_at--338--1831Chr03:22079788..22079812 (25 bp)
ACGCGAATCTCGTTGATTTCAAGGG
LOC_Os03g39760
Os.15692.1.S1_at--246--251Chr03:22079962..22079986 (25 bp)
ATATGTCGGAGGCATTCGGGATCAC
LOC_Os03g39760
Os.15692.1.S1_at--1078--10611Chr03:22079976..22080000 (25 bp)
TTCGGGATCACGGTGCGCAGGAAAT
LOC_Os03g39760
Os.15692.1.S1_at--1161--3031Chr03:22079998..22080022 (25 bp)
AATCGAAGCTTGTGTTGCACGCTAC
LOC_Os03g39760
Os.15692.1.S1_at--845--3331Chr03:22080025..22080049 (25 bp)
CACGTGTTCCGTGTTTGCATTAACA
LOC_Os03g39760
Os.15692.1.S1_at--709--6711Chr03:22080053..22080077 (25 bp)
GTTCGATGCTTTCGCACGTGTATAG
LOC_Os03g39760
Target Sequence 
TTCTACCTCGAGAATGCCGTGAGCAGTGCAACGTCATGGGCTACGACATAACCGAAGGAACTCGAGTGCTTGTAAATGCT
TGGGCCANTTGCAAGGGATACTAGGTATTGGGAGGATCCCGAGATTTTTAAACCAGAGAGATTCAACGCGAATCTCGTTG
ATTTCAAGGGTAATNATTTCGAGTATATCCCTTTTGGCTCCGGTAGGAGGGTGTGTCCTGGGATAACACTTGGGCTAACT
AGTATGGAGCTTGTGCTTGCAAGTTTGCTTTACNACTTCGATTGGGAGCTCCCAGGTGGCAAGAGGTGTGAAGAGATTGA
TATGTCGGAGGCATTCGGGATCACGGTGCGCAGGAAATCGAAGCTTGTGTTGCACGCTACGCCACGTGTTCCGTGTTTGC
ATTAACAGTGGTTCGATGCTTTCGCACGTGTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis