Browse Element(s) Details


OsAffx.10456.1.S1_at

Description gb:NM_184824.1
DB_XREF= gi:34896737
TID=OsAffx.10456.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0042N11.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3979010/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39740Os.33081.1.S1_at11/113+22065048..22071100expressed protein
LOC_Os03g39760Os.15692.1.S1_at11/113+22077957..22080213Cytochrome P450 family protein, expressed
LOC_Os03g39780OsAffx.22686.1.S1_at11/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39780OsAffx.20729.1.S1_x_at1/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39790OsAffx.10456.1.S1_at10/113+22090428..22092843retrotransposon protein, putative, unclassified
LOC_Os03g39820Os.45903.1.S1_at11/113+22102594..22104416expressed protein
LOC_Os03g39830Os.18384.1.S1_at11/113+22105006..22106227expressed protein
LOC_Os03g39840Os.41695.4.S1_x_at11/113+22108226..22114252transposon protein, putative, Mutator sub-class
LOC_Os03g39840Os.41695.15.S1_s_at2/113+22108226..22114252transposon protein, putative, Mutator sub-class
LOC_Os03g39850OsAffx.13256.1.S1_at11/113+22114876..22116121Glutathione S-transferase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10456.1.S1_at--115--3451Chr03:22091819..22091843 (25 bp)
CAGGCCGCCCGGTTCAAGCCATGGG
LOC_Os03g39790
OsAffx.10456.1.S1_at--751--5551Chr03:22091757..22091781 (25 bp)
GAAAGATGTCCGAATCTCGGCCGCC
LOC_Os03g39790
OsAffx.10456.1.S1_at--823--4151Chr03:22091711..22091735 (25 bp)
CGCCGAGCGAATAGCGGGCCAACCA
LOC_Os03g39790
OsAffx.10456.1.S1_at--605--5851Chr03:22091587..22091611 (25 bp)
GAGCCCCTGAAGTGGACCTTCAGAT
LOC_Os03g39790
OsAffx.10456.1.S1_at--582--4231Chr03:22091582..22091606 (25 bp)
CCTGAAGTGGACCTTCAGATGCCCC
LOC_Os03g39790
OsAffx.10456.1.S1_at--224--551NONE
ATCCCTCGCAGGGACACGCGAGGAG
NONE
OsAffx.10456.1.S1_at--885--4451Chr03:22090622..22090646 (25 bp)
GCCTCAAGCGCCCTATATGAGGCGC
LOC_Os03g39790
OsAffx.10456.1.S1_at--936--4151Chr03:22090614..22090638 (25 bp)
CGCCCTATATGAGGCGCTGGGCGAC
LOC_Os03g39790
OsAffx.10456.1.S1_at--511--6211Chr03:22090574..22090598 (25 bp)
GAGGCCCACGCCGAAGATCTGGCGA
LOC_Os03g39790
OsAffx.10456.1.S1_at--1026--4531Chr03:22090571..22090595 (25 bp)
GCCCACGCCGAAGATCTGGCGAAGA
LOC_Os03g39790
OsAffx.10456.1.S1_at--592--3991Chr03:22090532..22090556 (25 bp)
CGTCGGGTCCTTGAGGCGGCTGCCT
LOC_Os03g39790
Target Sequence 
CAGGCCGCCCGGTTCAAGCCATGGGCCCGGGGGAGACTCGGCCGGCGACCCGAAAGGGAAGCGAAAGATGTCCGAATCTC
GGCCGCCCTCTCCCCCGCGCGGAGGGGGCGCCGAGCGAATAGCGGGCCAACCACCGGCGGGCCACAAATGCCCCGCCGCG
TCCGAGGCAGGACGGAAGAAGAAGCGGCTCCGGAAGATAGGGCAGACGGAGCCATGCCGGGGGAGCTTCATCGAGCCCCT
GAAGTGGACCTTCAGATGCCCCCCTCCGGGATTCCTCCCAGGGGGTCTCGGCGTCCGATCCCTCGCAGGGACACGCGAGG
AGACGCTGGACTCGGTCATGCGGGAGACGGAGGAGGAGCGGCAGGCGGCGCTCATCGCCTCAAGCGCCCTATATGAGGCG
CTGGGCGACATCCGCCTGCAGTACGAGGCCCACGCCGAAGATCTGGCGAAGAGGGTCGAGGACGCCCGTCGGGTCCTTGA
GGCGGCTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis