Browse Element(s) Details


Os.33081.1.S1_at

Description gb:AK101832.1
DB_XREF= gi:32987041
TID=Os.33081.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0042N11.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068L21, full insert sequence.
FL= gb:AK101832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3974011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39690Os.28515.1.S1_at11/113+22037842..22040792Cytochrome P450 family protein, expressed
LOC_Os03g39700NANA3+22044250..22044729hypothetical protein
LOC_Os03g39710Os.315.1.S1_at11/113+22046645..22049999Sugar carrier protein C, putative, expressed
LOC_Os03g39720OsAffx.15352.1.S1_s_at11/113+22054288..22055579transposon protein, putative, unclassified
LOC_Os03g39720OsAffx.15352.1.S1_x_at11/113+22054288..22055579transposon protein, putative, unclassified
LOC_Os03g39730NANA3+22058377..22059737hypothetical protein
LOC_Os03g39740Os.33081.1.S1_at11/113+22065048..22071100expressed protein
LOC_Os03g39760Os.15692.1.S1_at11/113+22077957..22080213Cytochrome P450 family protein, expressed
LOC_Os03g39780OsAffx.22686.1.S1_at11/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39780OsAffx.20729.1.S1_x_at1/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39790OsAffx.10456.1.S1_at10/113+22090428..22092843retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33081.1.S1_at--899--4731Chr03:22065536..22065560 (25 bp)
GCTGTTTCTCATTCTGAAGTTCCAA
LOC_Os03g39740
Os.33081.1.S1_at--323--2511Chr03:22065495..22065519 (25 bp)
AACATTTGCCGATGAAACTGGAGGA
LOC_Os03g39740
Os.33081.1.S1_at--324--2391Chr03:22065435..22065459 (25 bp)
AAACTCTCTTCTTTCTGAATGCCAT
LOC_Os03g39740
Os.33081.1.S1_at--549--9191Chr03:22065416..22065440 (25 bp)
TGCCATAGCGAGTAACATCATTTCT
LOC_Os03g39740
Os.33081.1.S1_at--688--9531Chr03:22065394..22065418 (25 bp)
TCTACTAGTTGCTATCACGGACATT
LOC_Os03g39740
Os.33081.1.S1_at--245--2411Chr03:22065331..22065355 (25 bp)
AAACAAGCTGCTCGCAATCGGATTG
LOC_Os03g39740
Os.33081.1.S1_at--574--971Chr03:22065299..22065323 (25 bp)
AGGAGAATGCTTCCGTTCATTGTAA
LOC_Os03g39740
Os.33081.1.S1_at--196--10331Chr03:22065224..22065248 (25 bp)
TTTACTGGGATTAGGCTGACAACAT
LOC_Os03g39740
Os.33081.1.S1_at--243--91Chr03:22065201..22065225 (25 bp)
ATTGCCAGCGCGATATTGTTTTCCT
LOC_Os03g39740
Os.33081.1.S1_at--580--31Chr03:22065187..22065211 (25 bp)
ATTGTTTTCCTGTCCTATTTGTTTG
LOC_Os03g39740
Os.33081.1.S1_at--1143--6531Chr03:22065063..22065087 (25 bp)
GATTATTGTTGTCCTCTTATTCCAT
LOC_Os03g39740
Target Sequence 
GCTGTTTCTCATTCTGAAGTTCCAAGAAAACGAAAGAAGATAACATTTGCCGATGAAACTGGAGGAAAGCTCTGTCATGT
TAAGATGTTTACTGATGGACAAAACTCTCTTCTTTCTGAATGCCATAGCGAGTAACATCATTTCTACTAGTTGCTATCAC
GGACATTGATGATAACAATGTAAGCTTTCTGATAAACAAGAGATCAAACAAGCTGCTCGCAATCGGATTGTAGTGGAAGG
AGAATGCTTCCGTTCATTGTAAGATGTAGATGCAACAAAAAACTAGTGTTTGTTAGCTGTAAAGCCTTGGAATTTACTGG
GATTAGGCTGACAACATTGCCAGCGCGATATTGTTTTCCTGTCCTATTTGTTTGGATGCAAAAGGTCATGTAATTCATGT
AAAGCAGCTTGGGAATTGTTTGATTTGAAGGTCACATTGTAATCTGTAAACAAGAATTGACCTGCTGTAATGATTATTGT
TGTCCTCTTATTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis