Browse Element(s) Details


Os.28515.1.S1_at

Description gb:AK111441.1
DB_XREF= gi:32996650
TID=Os.28515.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28515 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (OSJNBb0042N11.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A07, full insert sequence.
FL= gb:AK111441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3969011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39660OsAffx.25440.1.S1_s_at11/113+22011391..22013092hypothetical protein
LOC_Os03g39660OsAffx.252.1.S1_x_at3/113+22011391..22013092hypothetical protein
LOC_Os03g39670NANA3+22023668..22024786retrotransposon protein, putative, unclassified
LOC_Os03g39680OsAffx.22684.1.S1_at11/113+22030346..22031587retrotransposon protein, putative, LINE subclass
LOC_Os03g39690Os.28515.1.S1_at11/113+22037842..22040792Cytochrome P450 family protein, expressed
LOC_Os03g39700NANA3+22044250..22044729hypothetical protein
LOC_Os03g39710Os.315.1.S1_at11/113+22046645..22049999Sugar carrier protein C, putative, expressed
LOC_Os03g39720OsAffx.15352.1.S1_s_at11/113+22054288..22055579transposon protein, putative, unclassified
LOC_Os03g39720OsAffx.15352.1.S1_x_at11/113+22054288..22055579transposon protein, putative, unclassified
LOC_Os03g39730NANA3+22058377..22059737hypothetical protein
LOC_Os03g39740Os.33081.1.S1_at11/113+22065048..22071100expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28515.1.S1_at--760--1211Chr03:22040254..22040278 (25 bp)
AGTTCATTCCTTTCGGTGCTGGGAG
LOC_Os03g39690
Os.28515.1.S1_at--405--6171Chr03:22040279..22040303 (25 bp)
GAGGATATGCCCTGGGATTGCACTT
LOC_Os03g39690
Os.28515.1.S1_at--594--7671Chr03:22040292..22040316 (25 bp)
GGGATTGCACTTGGGCTTGCCAATA
LOC_Os03g39690
Os.28515.1.S1_at--43--251Chr03:22040314..22040338 (25 bp)
ATATAGAGCTCATGCTTGCCAGCCT
LOC_Os03g39690
Os.28515.1.S1_at--303--5731Chr03:22040352..22040376 (25 bp)
GACTGGGAGTTCCTCGATCGAGACA
LOC_Os03g39690
Os.28515.1.S1_at--965--5771Chr03:22040382..22040406 (25 bp)
GACGAGATTGACTTGTCCGAGACAT
LOC_Os03g39690
Os.28515.1.S1_at--685--7251Chr03:22040396..22040420 (25 bp)
GTCCGAGACATTTGGTATCACTGCA
LOC_Os03g39690
Os.28515.1.S1_at--544--6911Chr03:22040444..22040468 (25 bp)
GTATGCTACACAACGTATTCCATGT
LOC_Os03g39690
Os.28515.1.S1_at--2--9011Chr03:22040500..22040524 (25 bp)
TGCATAACTAGGCACGTTCTCCATG
LOC_Os03g39690
Os.28515.1.S1_at--648--8271Chr03:22040532..22040556 (25 bp)
GGCTCCTCTTTATCTGGTAGACTAA
LOC_Os03g39690
Os.28515.1.S1_at--1122--7031Chr03:22040703..22040727 (25 bp)
GTAAGTATACCTCTCTCCGAATAAA
LOC_Os03g39690
Target Sequence 
AGTTCATTCCTTTCGGTGCTGGGAGGAGGATATGCCCTGGGATTGCACTTGGGCTTGCCAATATAGAGCTCATGCTTGCC
AGCCTCCTATACCATTTTGACTGGGAGTTCCTCGATCGAGACAGGAATGACGAGATTGACTTGTCCGAGACATTTGGTAT
CACTGCAAAGAGGAAGTCGAAGCTCATGGTGTATGCTACACAACGTATTCCATGTTTGGGTTAACTGTTTTGTGTATGTG
AACTCTTGCATAACTAGGCACGTTCTCCATGCTCTTATGGCTCCTCTTTATCTGGTAGACTAAACTTAATTCTCTGGTTA
CTTATAGATAATGTCACCCTAGGGTGAGTGATGTGAAATGTATTGATTTGAACTAGATAGTACCAAAAATATGTAATTTT
GATATATGATAAAAGTGTGCACCATTTTATGATGACAATTAATTATTTTGTAAGTATACCTCTCTCCGAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28515.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis