Browse Element(s) Details


OsAffx.22684.1.S1_at

Description gb:NM_184833.1
DB_XREF= gi:34896755
TID=OsAffx.22684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0042N11.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3968011/11retrotransposon protein, putative, LINE subclass
LOC_Os12g387401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39650OsAffx.3449.1.S1_at11/113+22003097..22007169Cytochrome P450 family protein, expressed
LOC_Os03g39650Os.47994.1.S1_x_at1/113+22003097..22007169Cytochrome P450 family protein, expressed
LOC_Os03g39660OsAffx.25440.1.S1_s_at11/113+22011391..22013092hypothetical protein
LOC_Os03g39660OsAffx.252.1.S1_x_at3/113+22011391..22013092hypothetical protein
LOC_Os03g39670NANA3+22023668..22024786retrotransposon protein, putative, unclassified
LOC_Os03g39680OsAffx.22684.1.S1_at11/113+22030346..22031587retrotransposon protein, putative, LINE subclass
LOC_Os03g39690Os.28515.1.S1_at11/113+22037842..22040792Cytochrome P450 family protein, expressed
LOC_Os03g39700NANA3+22044250..22044729hypothetical protein
LOC_Os03g39710Os.315.1.S1_at11/113+22046645..22049999Sugar carrier protein C, putative, expressed
LOC_Os03g39720OsAffx.15352.1.S1_s_at11/113+22054288..22055579transposon protein, putative, unclassified
LOC_Os03g39720OsAffx.15352.1.S1_x_at11/113+22054288..22055579transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22684.1.S1_at--546--4191Chr03:22031077..22031101 (25 bp)
CCCCTATTTAGGTTTGACGCTGCAT
LOC_Os03g39680
OsAffx.22684.1.S1_at--199--7532Chr12:23769605..23769629 (25 bp)
GTGGACTTCATTCCCTTGATTGACA
LOC_Os12g38740
OsAffx.22684.1.S1_at--182--10251Chr03:22031147..22031171 (25 bp)
TTTGGTGCACGCTTACCAGGTTGGA
LOC_Os03g39680
OsAffx.22684.1.S1_at--1020--10791Chr03:22031208..22031232 (25 bp)
TTGTTAAATCAGTTCTCACCGTCCT
LOC_Os03g39680
OsAffx.22684.1.S1_at--943--9671Chr03:22031223..22031247 (25 bp)
TCACCGTCCTTCCAATATATCATAT
LOC_Os03g39680
OsAffx.22684.1.S1_at--587--5771Chr03:22031321..22031345 (25 bp)
GACGACCCCGAGAATATCAGCGCAG
LOC_Os03g39680
OsAffx.22684.1.S1_at--504--10851Chr03:22031362..22031386 (25 bp)
TTGGAGCACAGTTTGCATGCCGAAA
LOC_Os03g39680
OsAffx.22684.1.S1_at--942--8391Chr03:22031396..22031420 (25 bp)
GGCCTCGGAAGTGTAGACCTCAACA
LOC_Os03g39680
OsAffx.22684.1.S1_at--372--2831Chr03:22031420..22031444 (25 bp)
AAGTTCTCTAGAGCCATTCGTCTTC
LOC_Os03g39680
OsAffx.22684.1.S1_at--301--8651Chr03:22031487..22031511 (25 bp)
TGGGCTCAGAGTTGCCTTGTGACAA
LOC_Os03g39680
OsAffx.22684.1.S1_at--677--2771Chr03:22031519..22031543 (25 bp)
AAGAGTCTTTTCCAAGTTGCTACAG
LOC_Os03g39680
Target Sequence 
CCCCTATTTAGGTTTGACGCTGCATACGTGCAAACTGAGGAAAGTGGACTTCATTCCCTTGATTGACAAATTTGGTGCAC
GCTTACCAGGTTGGAAAGGAAAGTTTTTCACTTCAGAAAACCGTGAAACTCTTGTTAAATCAGTTCTCACCGTCCTTCCA
ATATATCATATGATAGGAACCCAAACACCTAAGTTGGTTATTAAACACATTGATCGTTTTTGTAGAGCATTCCTTTGGAA
AAGAGACGACCCCGAGAATATCAGCGCAGGAAACAGCCTAGTTAATTGGAGCACAGTTTGCATGCCGAAAAATTTAGGAG
GCCTCGGAAGTGTAGACCTCAACAAGTTCTCTAGAGCCATTCGTCTTCGCTTTTCTTGGTTCAGTTGGAAGGAGGAAAAC
AAGCCTTGGTTGGGCTCAGAGTTGCCTTGTGACAATGTTGACAAGAGTCTTTTCCAAGTTGCTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis