Browse Element(s) Details


OsAffx.25440.1.S1_s_at

Description gb:NM_190952.1
DB_XREF= gi:34908987
GEN=P0003D09.32
TID=OsAffx.25440.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0003D09.32 (P0003D09.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3966011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39650OsAffx.3449.1.S1_at11/113+22003097..22007169Cytochrome P450 family protein, expressed
LOC_Os03g39650Os.47994.1.S1_x_at1/113+22003097..22007169Cytochrome P450 family protein, expressed
LOC_Os03g39660OsAffx.25440.1.S1_s_at11/113+22011391..22013092hypothetical protein
LOC_Os03g39660OsAffx.252.1.S1_x_at3/113+22011391..22013092hypothetical protein
LOC_Os03g39670NANA3+22023668..22024786retrotransposon protein, putative, unclassified
LOC_Os03g39680OsAffx.22684.1.S1_at11/113+22030346..22031587retrotransposon protein, putative, LINE subclass
LOC_Os03g39690Os.28515.1.S1_at11/113+22037842..22040792Cytochrome P450 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25440.1.S1_s_at--845--1213Chr12:4234650..4234671 (22 bp)
AGTTAATGCCGAAGCGAGGCGCCAC
NONE
OsAffx.25440.1.S1_s_at--509--9177Chr03:22012653..22012677 (25 bp)
TGCCGTCGAGCCGTGGTGGGAGGAT
LOC_Os03g39660
OsAffx.25440.1.S1_s_at--477--9955Chr03:22012699..22012723 (25 bp)
TACCGGATTAACCTCCGCCGAGACG
LOC_Os03g39660
OsAffx.25440.1.S1_s_at--300--10497Chr11:3266649..3266673 (25 bp)
TTAACCTCCGCCGAGACGATATGGC
NONE
OsAffx.25440.1.S1_s_at--93--4233Chr11:3266659..3266683 (25 bp)
CCGAGACGATATGGCCAGATGCAAT
NONE
OsAffx.25440.1.S1_s_at--34--8454Chr11:3266671..3266691 (21 bp)
GGCCAGATGCAATTTGGTTGCCATT
NONE
OsAffx.25440.1.S1_s_at--304--152Chr03:22012739..22012763 (25 bp)
ATTTGGTTGCCATTGTTAGGGTCTC
LOC_Os03g39660
OsAffx.25440.1.S1_s_at--82--10692Chr03:22012745..22012769 (25 bp)
TTGCCATTGTTAGGGTCTCAGTTGC
LOC_Os03g39660
OsAffx.25440.1.S1_s_at--218--4256Chr12:4234837..4234861 (25 bp)
CCGTCATGAGGATGCGCGGGTCGAC
NONE
OsAffx.25440.1.S1_s_at--1052--5077Chr12:23988586..23988607 (22 bp)
GCACCAAATTGCCACACGGGAGTGA
NONE
OsAffx.25440.1.S1_s_at--89--4376Chr03:22012854..22012878 (25 bp)
CCAAATTGCCACACGGGAGTGATGT
LOC_Os03g39660
Target Sequence 
AGTTAATGCCGAAGCGAGGCGCCACCGCCGTTGACCTCCCATCGACGCTGCCGTCGAGCCGTGGTGGGAGGATGATAGGT
CGTCGGCTGTCCGCTACCGGATTAACCTCCGCCGAGACGATATGGCCAGATGCAATTTGGTTGCCATTGTTAGGGTCTCA
GTTGCTGTCATTGAGTTCGCCTCGCCACCGTCATGAGGATGCGCGGGTCGACGCGGAGCTCCGTCGTGTGCCACCGAGCC
GCCACCGCACCAAATTGCCACACGGGAGTGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25440.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis