Browse Element(s) Details


OsAffx.252.1.S1_x_at

Description gb:NM_195920.1
DB_XREF= gi:37533199
TID=OsAffx.252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0078C13.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g396603/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39650OsAffx.3449.1.S1_at11/113+22003097..22007169Cytochrome P450 family protein, expressed
LOC_Os03g39650Os.47994.1.S1_x_at1/113+22003097..22007169Cytochrome P450 family protein, expressed
LOC_Os03g39660OsAffx.25440.1.S1_s_at11/113+22011391..22013092hypothetical protein
LOC_Os03g39660OsAffx.252.1.S1_x_at3/113+22011391..22013092hypothetical protein
LOC_Os03g39670NANA3+22023668..22024786retrotransposon protein, putative, unclassified
LOC_Os03g39680OsAffx.22684.1.S1_at11/113+22030346..22031587retrotransposon protein, putative, LINE subclass
LOC_Os03g39690Os.28515.1.S1_at11/113+22037842..22040792Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.252.1.S1_x_at--349--5091Chr10:10207283..10207307 (25 bp)
GCACCATATTGCCACACGGGAGTGA
NONE
OsAffx.252.1.S1_x_at--244--95Chr03:22012858..22012882 (25 bp)
ATTGCCACACGGGAGTGATGTCGTC
LOC_Os03g39660
OsAffx.252.1.S1_x_at--855--2176Chr03:22012864..22012992 (25 bp)
ACACGGGAGTGATGTCGTCGCCGCC
LOC_Os03g39660
OsAffx.252.1.S1_x_at--1118--4492Chr03:22012886..22012911 (25 bp)
GCCGTCCTGCCAATCAGGTAGTGGA
LOC_Os03g39660
OsAffx.252.1.S1_x_at--803--3171Chr10:10207238..10207262 (25 bp)
CAATCAGGTAGTGGACGGGTCATCG
NONE
OsAffx.252.1.S1_x_at--434--411Chr10:10207236..10207260 (25 bp)
ATCAGGTAGTGGACGGGTCATCGAT
NONE
OsAffx.252.1.S1_x_at--279--2331Chr10:10207177..10207201 (25 bp)
AAAGTCGACAGACGACGGCCTCCGA
NONE
OsAffx.252.1.S1_x_at--1058--3971Chr10:10207117..10207141 (25 bp)
CGGTGGACACCGTTGCAGACAATGA
NONE
OsAffx.252.1.S1_x_at--106--9531Chr10:10207062..10207086 (25 bp)
TCTCTTGCTCGGTCATTTAGGCTTA
NONE
OsAffx.252.1.S1_x_at--597--3631Chr10:10207059..10207083 (25 bp)
CTTGCTCGGTCATTTAGGCTTACCA
NONE
OsAffx.252.1.S1_x_at--383--4811Chr10:10207056..10207080 (25 bp)
GCTCGGTCATTTAGGCTTACCAGTT
NONE
Target Sequence 
GCACCATATTGCCACACGGGAGTGATGTCGTCGCCGCCGTCCTGCCAATCAGGTAGTGGACGGGTCATCGATGACCTCCT
CGCCGTGTGCCGCCCTAACTCCCTTCAAAGTCGACAGACGACGGCCTCCGACGCTGCCGCCGTGCTCGAGGGGCCGGTGC
ACCGGGCGGTGGACACCGTTGCAGACAATGAATGGGAAAGGGGAAACCCAAATTCCCCCCTTCTCTTGCTCGGTCATTTA
GGCTTACCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.252.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis