Browse Element(s) Details


Os.315.1.S1_at

Description gb:AK071180.1
DB_XREF= gi:32981203
TID=Os.315.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) monosaccharide transporter 2 (OSJNBb0042N11.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082A15, full insert sequence.
FL= gb:AK071180.1 gb:AB052884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3971011/11Sugar carrier protein C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39670NANA3+22023668..22024786retrotransposon protein, putative, unclassified
LOC_Os03g39680OsAffx.22684.1.S1_at11/113+22030346..22031587retrotransposon protein, putative, LINE subclass
LOC_Os03g39690Os.28515.1.S1_at11/113+22037842..22040792Cytochrome P450 family protein, expressed
LOC_Os03g39700NANA3+22044250..22044729hypothetical protein
LOC_Os03g39710Os.315.1.S1_at11/113+22046645..22049999Sugar carrier protein C, putative, expressed
LOC_Os03g39720OsAffx.15352.1.S1_s_at11/113+22054288..22055579transposon protein, putative, unclassified
LOC_Os03g39720OsAffx.15352.1.S1_x_at11/113+22054288..22055579transposon protein, putative, unclassified
LOC_Os03g39730NANA3+22058377..22059737hypothetical protein
LOC_Os03g39740Os.33081.1.S1_at11/113+22065048..22071100expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.315.1.S1_at--140--1691Chr03:22047218..22047239 (22 bp)
AGCCAGGTTATCATTGGAACGCTGA
LOC_Os03g39710
Os.315.1.S1_at--421--4631Chr03:22047169..22047193 (25 bp)
GCGATGGCAACATCTCGAGGGCGTT
LOC_Os03g39710
Os.315.1.S1_at--864--4291Chr03:22046940..22046964 (25 bp)
CCTCTTCTACTTCTTTAGCGGATGG
LOC_Os03g39710
Os.315.1.S1_at--182--811Chr03:22046919..22046943 (25 bp)
ATGGGTGCTCGTGATGACGCTCTTC
LOC_Os03g39710
Os.315.1.S1_at--922--4651Chr03:22046866..22046890 (25 bp)
GCGTGCCGATCGAGAAGATGACCGT
LOC_Os03g39710
Os.315.1.S1_at--276--691Chr03:22046849..22046873 (25 bp)
ATGACCGTCGTGTGGAGAACGCACT
LOC_Os03g39710
Os.315.1.S1_at--1101--5031Chr03:22046792..22046816 (25 bp)
GCAGATGCACACGTTCAAGTGGCAA
LOC_Os03g39710
Os.315.1.S1_at--417--2231Chr03:22046748..22046772 (25 bp)
ACAATGCCACTGCTGTCTGATTTTA
LOC_Os03g39710
Os.315.1.S1_at--226--1291Chr03:22046704..22046728 (25 bp)
AGATGCGTATTTTGGGACTGGTTAA
LOC_Os03g39710
Os.315.1.S1_at--184--4751Chr03:22046673..22046697 (25 bp)
GCTGATATCCAGCATGCGCATCTCG
LOC_Os03g39710
Os.315.1.S1_at--278--4131Chr03:22046657..22046681 (25 bp)
CGCATCTCGAAGTAGCGCGGAGCAA
LOC_Os03g39710
Target Sequence 
AGCCAGGTTATCATTGGAACGCTGATCGGTGTGGTGTTTGGTACGAGTGGCGATGGCAACATCTCGAGGGCGTTGGCGGT
CTGCATCGTGGTGTTCATCTGCGTCTACGTCGCCGGCTTCGCTTGGTCGTGGGGCCCGCTTGGCGTCCTCCTGCCGAGCG
AGATCTTCCCGCTGGAGGTCCGGCCGGCGGGGCAGAGCATCAGCGTGGCCGTGAACATGCTCTGCACGTTCGCCGTCGCG
GAGGCCTTCCTCCCGATGCTCTGCCACATGAGGTTCGGCCTCTTCTACTTCTTTAGCGGATGGGTGCTCGTGATGACGCT
CTTCGTCTCGGCCTTCCTGCCTGAGACCAAGGGCGTGCCGATCGAGAAGATGACCGTCGTGTGGAGAACGCACTGGTTTT
GGGGTAGATTTTACTGTAACCAGGATGCAGATGCACACGTTCAAGTGGCAAACAGCAAAGTTTGAAATGCACAATGCCAC
TGCTGTCTGATTTTATACAGATGTAGCAAATGTGAGATGCGTATTTTGGGACTGGTTAATTTGCTGCTGATATCCAGCAT
GCGCATCTCGAAGTAGCGCGGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis