Browse Element(s) Details


Os.15833.1.S1_at

Description gb:NM_194892.1
DB_XREF= gi:37531143
TID=Os.15833.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15833 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNAa0028C16.14), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0630011/11transposon protein, putative, unclassified
LOC_Os12g037604/11retrotransposon protein, putative, unclassified
LOC_Os11g342903/11retrotransposon protein, putative, unclassified
LOC_Os08g162403/11retrotransposon protein, putative, unclassified
LOC_Os08g084601/11retrotransposon protein, putative, unclassified
LOC_Os11g237361/11retrotransposon protein, putative, unclassified, expressed
LOC_Os12g290701/11retrotransposon protein, putative, unclassified
LOC_Os12g333601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06270Os.27691.1.S1_x_at1/1110+3197395..3202967retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g06280OsAffx.20736.1.S1_at11/1110+3206055..3207031retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06290NANA10+3209701..3216421retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06300Os.15833.1.S1_at11/1110+3222433..3227058transposon protein, putative, unclassified
LOC_Os10g06300Os.46314.2.S1_x_at5/1110+3222433..3227058transposon protein, putative, unclassified
LOC_Os10g06300Os.47114.1.S1_x_at2/1110+3222433..3227058transposon protein, putative, unclassified
LOC_Os10g06300OsAffx.22896.1.S1_x_at1/1110+3222433..3227058transposon protein, putative, unclassified
LOC_Os10g06310Os.47999.3.A1_at5/1110+3229590..3237950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06310Os.45173.1.S1_x_at3/1110+3229590..3237950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06310OsAffx.20733.1.A1_x_at2/1110+3229590..3237950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06310Os.47999.3.A1_x_at2/1110+3229590..3237950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06310OsAffx.20877.1.S1_at1/1110+3229590..3237950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06320NANA10+3240909..3241718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06330NANA10+3241976..3246490retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06340OsAffx.22699.1.S1_x_at1/1110+3249378..3254204retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15833.1.S1_at--807--1273Chr11:19583184..19583208 (25 bp)
AGATCCAGAAGCTCGGTTTGACTGA
LOC_Os11g34290
Os.15833.1.S1_at--278--4813Chr11:19583194..19583218 (25 bp)
GCTCGGTTTGACTGACGTCCATGAA
LOC_Os11g34290
Os.15833.1.S1_at--1125--2452Chr10:3226712..3226736 (25 bp)
AACAAGTTCCAGACGGATCAGCCCA
LOC_Os10g06300
Os.15833.1.S1_at--612--5753Chr10:3226723..3226747 (25 bp)
GACGGATCAGCCCAGCCGAGTGACA
LOC_Os10g06300
Os.15833.1.S1_at--1036--4532Chr10:3226732..3226756 (25 bp)
GCCCAGCCGAGTGACAAAGGCGTTA
LOC_Os10g06300
Os.15833.1.S1_at--26--2953Chr11:19583456..19583475 (20 bp)
AAGGCGTTACAGATGGGTCGACCCA
LOC_Os11g34290
Os.15833.1.S1_at--680--5772Chr10:3226774..3226798 (25 bp)
GAGAACCAGGGTGACTACTTCCATG
LOC_Os10g06300
Os.15833.1.S1_at--347--7711Chr10:3226782..3226806 (25 bp)
GGGTGACTACTTCCATGGAGTACAT
LOC_Os10g06300
Os.15833.1.S1_at--1090--1031Chr10:3226815..3226839 (25 bp)
AGGTGACGGCACTCAGGGACCACAA
LOC_Os10g06300
Os.15833.1.S1_at--524--6391Chr10:3226897..3226921 (25 bp)
GATCGAGTTGACTATGTTGTGTATA
LOC_Os10g06300
Os.15833.1.S1_at--665--9454Chr12:20144101..20144125 (25 bp)
TCTGGAGTGTTGACTAATACCTTGT
LOC_Os12g33360
Target Sequence 
AGATCCAGAAGCTCGGTTTGACTGACGTCCATGAAGGAAACGTNGTGCCCATNGATCCAGAGAAGNTCNCTCCCGAACAG
AAGNAAGACTTCNATGCNATGATGCANCAAGCACNAGATCAATTTTTAAGTTCATTCATGCAGACTCGCAAGGGCACATT
TGTNCAGAAGTACAAGGTGAAGGTGGTTCNTGAGGATCNTGGGATCGGTTCTTCTAAAGNGGGAGAAAAGAAACAAGTTC
CAGACGGATCAGCCCAGCCGAGTGACAAAGGCGTTACAGATGGGTCGACCCAGGAGAACCAGGGTGACTACTTCCATGGA
GTACATGGAGTTCAAGGTGACGGCACTCAGGGACCACAAGGGGGAAATCTTAATCAGAATGACAATGCATTCCAAGATTT
TTTCAATAACTTTCAAGATCGAGTTGACTATGTTGTGTATAGTGCTTTGATTAATCAATCTGGAGTGTTGACTAATACCT
TGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis