Browse Element(s) Details


Os.15868.1.S1_at

Description gb:AK070774.1
DB_XREF= gi:32980797
TID=Os.15868.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072K15, full insert sequence.
FL= gb:AK070774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g466008/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46570Os.27691.1.S1_x_at2/112+28391863..28393311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46570Os.27691.2.S1_x_at2/112+28391863..28393311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46580Os.27691.1.S1_x_at2/112+28395516..28400717retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46589NANA2+28414463..28414706NA
LOC_Os02g46600Os.15868.1.S1_at8/112+28415184..28418058Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46610Os.18638.1.S1_at11/112+28429222..28430833zinc-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15868.1.S1_at--905--331Chr02:28415730..28415754 (25 bp)
ATACAATTGGGATCTGCTCCAGAGC
LOC_Os02g46600
Os.15868.1.S1_at--78--5951Chr02:28415709..28415733 (25 bp)
GAGCAGCCTCTCTGGATTAGTGAGT
LOC_Os02g46600
Os.15868.1.S1_at--664--10611Chr02:28415603..28415627 (25 bp)
TTGCGTCTACCATTTTATCTTCCTA
LOC_Os02g46600
Os.15868.1.S1_at--671--10151Chr02:28415588..28415612 (25 bp)
TATCTTCCTAGGTGTCATTGTGGCA
LOC_Os02g46600
Os.15868.1.S1_at--94--1451Chr02:28415545..28415569 (25 bp)
AGAACCGTGGCCAATTCAGCTTGAT
LOC_Os02g46600
Os.15868.1.S1_at--381--1051Chr02:28415474..28415498 (25 bp)
AGGTGACCAGTGACATCCTACTCAG
LOC_Os02g46600
Os.15868.1.S1_at--338--7111NONE
GTCAGACTGCAGTTGTGGTTTTCAA
NONE
Os.15868.1.S1_at--353--5951Chr02:28415252..28415276 (25 bp)
GAGCAACTGTCTATCCATGAAACGT
LOC_Os02g46600
Os.15868.1.S1_at--782--6891Chr02:28415229..28415253 (25 bp)
GTATACTCAACCCAGTGATCTCATT
LOC_Os02g46600
Os.15868.1.S1_at--816--451NONE
ATCTCATTAGTCACAGGGCTCACAG
NONE
Os.15868.1.S1_at--600--8871NONE
TGATGGTTTTTCTGTACTCCTAAGC
NONE
Target Sequence 
ATACAATTGGGATCTGCTCCAGAGCAGCCTCTCTGGATTAGTGAGTTAGGCATTACTAGATCAAAGACTCTCCAAGTGAG
AAGTGTGACACTTTCAGTTCTTTTTCCACCTCCATTTTTGTGTGCTTTTGCGTCTACCATTTTATCTTCCTAGGTGTCAT
TGTGGCACAATTTGGGGATTGAATGAGAACCGTGGCCAATTCAGCTTGATCCATGNCCAGATCTCATCTCAGGCTCNTCA
GATGTNNGCACAGTTTAGGTGACCAGTGACATCCTACTCAGAATGCCAGCTGTATAGACATTGGTAACACATCCCAATCA
TACAGGTTTCTATTACGTACAACAATTTGAGTGCCCGNCCTGGTCTTCAAATAACATGCGTTTTTCATATGTCAGACTGC
AGTTGTGGTTTTCAAATAACATGCGTTTTTCATATGTCAGACTGCAGTTTGGTTAGGTTGAAGCAGTACTAGCTAGATGA
GCAACTGTCTATCCATGAAACGTATACTCAACCCAGTGATCTCATTAGTCACAGGGCTCACAGGGCTTCTGATGGTTTTT
CTGTACTCCTAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis