Browse Element(s) Details


Os.15977.1.S1_at

Description gb:BI800919
DB_XREF= gi:16573623
DB_XREF=H031H09
CLONE=H031H09
TID=Os.15977.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative sugar kinase (OJ1123F12.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0688011/11pfkB-type carbohydrate kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06810OsAffx.12758.1.S1_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.12758.1.S1_x_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.2.S1_x_at4/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22251.1.S1_x_at3/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.1.S1_x_at1/113+3433880..3434470expressed protein
LOC_Os03g06820OsAffx.3155.1.S1_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06820OsAffx.3155.1.S1_x_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06830OsAffx.24997.1.S1_at11/113+3441932..3442201hypothetical protein
LOC_Os03g06840Os.18038.1.S1_at11/113+3447352..3448250GRF zinc finger family protein, expressed
LOC_Os03g06850Os.38278.2.S1_x_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.2.S1_at11/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06850Os.38278.1.S1_at3/113+3449132..3449882B3 DNA binding domain containing protein, expressed
LOC_Os03g06860Os.36451.2.S1_x_at11/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06860Os.36451.1.S1_at3/113+3450288..3452699transposon protein, putative, unclassified, expressed
LOC_Os03g06870OsAffx.3156.1.S1_at11/113+3455682..3455939expressed protein
LOC_Os03g06880Os.15977.1.S1_at11/113+3458553..3461310pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os03g06890OsAffx.24998.1.S1_at11/113+3462464..3464819expressed protein
LOC_Os03g06900OsAffx.10050.1.S1_at11/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06900OsAffx.15517.1.S1_at1/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06910OsAffx.24999.1.S1_at11/113+3481643..3483589Rf1 protein, mitochondrial precursor, putative
LOC_Os03g06920Os.43861.1.S1_at11/113+3484678..3491994SNF2 domain-containing protein, putative, expressed
LOC_Os03g06920OsAffx.14946.1.S1_at1/113+3484678..3491994SNF2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15977.1.S1_at--1017--631Chr03:3460715..3460739 (25 bp)
ATGCAGTGGGTGCTGCAACTGCCAC
LOC_Os03g06880
Os.15977.1.S1_at--1033--7571Chr03:3460748..3460772 (25 bp)
GGGCAGGTCGGAATGTTGCTCACCT
LOC_Os03g06880
Os.15977.1.S1_at--1101--5371Chr03:3460843..3460867 (25 bp)
GAAGCAAGTTCATTCTGTTCTGAAG
LOC_Os03g06880
Os.15977.1.S1_at--765--3071Chr03:3460894..3460918 (25 bp)
AATAGTTTCAGTGACCGCCTTGTGC
LOC_Os03g06880
Os.15977.1.S1_at--883--6691Chr03:3460921..3460945 (25 bp)
GTTCCTACTTGCAATGTGGTTTCCA
LOC_Os03g06880
Os.15977.1.S1_at--641--2631Chr03:3460945..3460969 (25 bp)
AACCTCCTTTCTATGCTTGAGGCAG
LOC_Os03g06880
Os.15977.1.S1_at--1038--2131Chr03:3460984..3461008 (25 bp)
ACAGTTCAGGCTTAATCCCATCTTG
LOC_Os03g06880
Os.15977.1.S1_at--2--10191Chr03:3461049..3461073 (25 bp)
TATAGATTCTTCTTTTGCCAGACCG
LOC_Os03g06880
Os.15977.1.S1_at--847--9191Chr03:3461064..3461088 (25 bp)
TGCCAGACCGTCACACTGATTTCAT
LOC_Os03g06880
Os.15977.1.S1_at--286--8511Chr03:3461225..3461249 (25 bp)
TGGAACATGGTGTCCCTTTAACTAA
LOC_Os03g06880
Os.15977.1.S1_at--332--10171Chr03:3461256..3461280 (25 bp)
TATCTTCGACTGATCATCTGTTTGC
LOC_Os03g06880
Target Sequence 
ATGCAGTGGGTGCTGCAACTGCCACTGGCTGTGGGGCAGGTCGGAATGTTGCTCACCTGGATAAAGTATTACAACTCTTG
AGAGAATCCAATATCAATGAGGACGATACGCCGTGGAGCGAGTTGATTGAAGCAAGTTCATTCTGTTCTGAAGTTTCAGT
GCTGTCTAAGACAGCAGTTAATAGTTTCAGTGACCGCCTTGTGCATGTTCCTACTTGCAATGTGGTTTCCAACCTCCTTT
CTATGCTTGAGGCAGTGTNGGAGCGAAGCACAGTTCAGGCTTAATCCCATCTTGAATGGTATATGGGGGCCCNNNTTTTT
TGCCATTAAATCATTCATATAGATTCTTCTTTTGCCAGACCGTCACACTGATTTCATGTGACGAGTGATAGTTGGAGGCT
GGCCNCCANGGAAAGCTATTTGTTGGAAAGATGTTTTGGAAGCTTTTAGTAAATGTGCAGTAGTGGTCTNGGCTAGAAAC
ATCGTATTTTACCCTAACTTTTGCNCTNTTTGTTGGAACATGGTGTCCCTTTAACTAACCAAGTTATCTTCGACTGATCA
TCTGTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis