Browse Element(s) Details


Os.16065.2.S1_x_at

Description gb:NM_188909.1
DB_XREF= gi:34904901
GEN=OSJNBb0011E04.21
TID=Os.16065.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to pre-mRNA processing protein (OSJNBb0011E04.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) similar to pre-mRNA processing protein (OSJNBb0011E04.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2912411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29060OsAffx.29419.3.S1_at1/118+17663805..17665680retrotransposon protein, putative, unclassified
LOC_Os08g29070OsAffx.20387.1.S1_x_at1/118+17665942..17667252retrotransposon protein, putative, unclassified
LOC_Os08g29080OsAffx.30486.1.S1_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29080OsAffx.29222.1.S1_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29080OsAffx.31069.1.S1_x_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29090OsAffx.20867.1.S1_at10/118+17679322..17680496hypothetical protein
LOC_Os08g29090OsAffx.20867.1.S1_x_at10/118+17679322..17680496hypothetical protein
LOC_Os08g29100Os.33962.1.S1_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29100Os.33962.1.S2_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29100OsAffx.20866.1.S1_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29110Os.35567.1.S1_at10/118+17685599..17687678Thioredoxin family protein, expressed
LOC_Os08g29124Os.16065.2.S1_x_at11/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.5972.1.S1_at10/118+17689525..17705293expressed protein
LOC_Os08g29124Os.16065.1.S1_at9/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.14555.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.9687.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29140OsAffx.5973.1.S1_at11/118+17709072..17709728hypothetical protein
LOC_Os08g29150Os.24017.1.S1_at8/118+17711347..17718074Phospholipid-transporting ATPase 9, putative, expressed
LOC_Os08g29160Os.14369.1.A1_a_at11/118+17719062..177248835'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os08g29160Os.14369.1.A2_at11/118+17719062..177248835'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os08g29170Os.14369.2.S1_at11/118+17722838..17724773Quinone oxidoreductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0005669cellular_componenttranscription factor TFIID complex
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16065.2.S1_x_at--503--2491Chr08:17695582..17695606 (25 bp)
AACAGATGGTACTTTGGCAGCAACA
LOC_Os08g29124
Os.16065.2.S1_x_at--42--2211Chr08:17695497..17695521 (25 bp)
ACAACAGCATGCACTGCCAGTTCAG
LOC_Os08g29124
Os.16065.2.S1_x_at--275--2251Chr08:17695457..17695481 (25 bp)
AAATACAGTCAGTTACCTTCCTCGG
LOC_Os08g29124
Os.16065.2.S1_x_at--769--6431Chr08:17695382..17695406 (25 bp)
GATCATCAAAGCGAACTTGTGCAGC
LOC_Os08g29124
Os.16065.2.S1_x_at--962--5052Chr08:17695359..17695383 (25 bp)
GCAGCAGCAAGTTTATTTCCAGCAA
LOC_Os08g29124
Os.16065.2.S1_x_at--599--3291Chr08:17695328..17695352 (25 bp)
CAAATGTATCTTATGCAGCAGCAGC
LOC_Os08g29124
Os.16065.2.S1_x_at--925--5051Chr08:17695275..17695299 (25 bp)
GCAGCAGCTACTTCAACAGCAATTA
LOC_Os08g29124
Os.16065.2.S1_x_at--253--2471Chr08:17695243..17695267 (25 bp)
AACAACAGTATCTCTCGCAGATGCC
LOC_Os08g29124
Os.16065.2.S1_x_at--532--2971Chr08:17695137..17695161 (25 bp)
AATGGTAGTTTTGCAGCAGCAGCAG
LOC_Os08g29124
Os.16065.2.S1_x_at--1059--5051Chr08:17695116..17695140 (25 bp)
GCAGCAGCAACAGTTTATCCAACAG
LOC_Os08g29124
Os.16065.2.S1_x_at--550--6331Chr08:17695089..17695113 (25 bp)
GATGCAGCAATACCTTCAACAGCAA
LOC_Os08g29124
Target Sequence 
AACAGATGGTACTTTGGCAGCAACAAGTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAACAACTA
CAGCTACAACAGCATGCACTGCCAGTTCAGCAACAGCCTGACCAAAAATACAGTCAGTTACCTTCCTCGGGGGATACTAG
ACATGAACAAAATAAACCGCAGAAACTTGAATCTCAAATGGATCATCAAAGCGAACTTGTGCAGCAGCAGCAAGTTTATT
TCCAGCAACAGCAGCAAATGTATCTTATGCAGCAGCAGCAGATGTATCAACAGCAGCAACAGCTGCAGCAGCAGCTACTT
CAACAGCAATTATTGCAGCAACAACAGTATCTCTCGCAGATGCCACAGCAGCAACAAAACATGACACAGCAACAGCAGCT
ATTTCAACAGCAACAGCAGCAACTATTTCAGCAGCAACAGCAGCAAATGGTAGTTTTGCAGCAGCAGCAGCAGCAACAGT
TTATCCAACAGCAGATGCAGCAATACCTTCAACAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16065.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis