Browse Element(s) Details


Os.16105.1.S1_at

Description gb:AK062627.1
DB_XREF= gi:32972645
TID=Os.16105.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-C04, full insert sequence.
FL= gb:AK062627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0745011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07420OsAffx.25595.2.S1_x_at3/1110+3910457..3910903hypothetical protein
LOC_Os10g07420OsAffx.25595.2.S1_at2/1110+3910457..3910903hypothetical protein
LOC_Os10g07430Os.46567.1.S1_at11/1110+3917158..3919926expressed protein
LOC_Os10g07440NANA10+3925348..3926042expressed protein
LOC_Os10g07450Os.16105.1.S1_at11/1110+3933608..3934170expressed protein
LOC_Os10g07460OsAffx.8479.1.S1_at11/1110+3934703..3942547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g07460Os.50619.1.S1_at1/1110+3934703..3942547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g07470OsAffx.30332.1.S1_at11/1110+3946452..3952705hypothetical protein
LOC_Os10g07470Os.55169.1.S1_at11/1110+3946452..3952705hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16105.1.S1_at--176--3751Chr10:3934131..3934155 (25 bp)
CTCACTCGCTCTTCTCCAGAGGAGG
LOC_Os10g07450
Os.16105.1.S1_at--495--6711Chr10:3933809..3933833 (25 bp)
GTTCGACGGGCTGCGCTTCATCGAG
LOC_Os10g07450
Os.16105.1.S1_at--639--3471Chr10:3933745..3933769 (25 bp)
CAGGATTCATGGCTTAGTTAGGTAG
LOC_Os10g07450
Os.16105.1.S1_at--243--1031Chr10:3933726..3933750 (25 bp)
AGGTAGCTAGATTAGCATTCGCGAA
LOC_Os10g07450
Os.16105.1.S1_at--571--91Chr10:3933710..3933734 (25 bp)
ATTCGCGAAGAGCAGAATGGATTTC
LOC_Os10g07450
Os.16105.1.S1_at--1070--2951Chr10:3933695..3933719 (25 bp)
AATGGATTTCAGTTAGCCTCAGGAT
LOC_Os10g07450
Os.16105.1.S1_at--982--6771Chr10:3933684..3933708 (25 bp)
GTTAGCCTCAGGATGGGTGAAAGAT
LOC_Os10g07450
Os.16105.1.S1_at--1047--5211Chr10:3933659..3933683 (25 bp)
GAACGAATTAGTTACTACTACCATC
LOC_Os10g07450
Os.16105.1.S1_at--758--6771Chr10:3933649..3933673 (25 bp)
GTTACTACTACCATCATTAATTGAC
LOC_Os10g07450
Os.16105.1.S1_at--151--10511Chr10:3933633..3933657 (25 bp)
TTAATTGACTGTGCTGTTCTTCCTG
LOC_Os10g07450
Os.16105.1.S1_at--881--6731Chr10:3933618..3933642 (25 bp)
GTTCTTCCTGCTTAATCTGAGTTTG
LOC_Os10g07450
Target Sequence 
CTCACTCGCTCTTCTCCAGAGGAGGCGGCGGTCTCTCCTCCCCCCCTCGCCGTCTGCCGGAGATGAAGTGGGCCGCCGCC
GCCGCCGCCACTGCCTCGGCCGCGGCCACCGCCGTCGCGTCCGCCGCCACCGCCGCCGCCACCGAGCGCTGCGTCACCCC
ATGCTCCAATCCCACGGGGTCGCCGGCGTCGAGGGGGAATGGGCGGAGGAGCGCGGCGGAGGACCGGTTCGNGCCGCGGT
TCGACGGGCTGCGCTTCATCGAGACCCTCGTCACCGCTCACCGTTGAACCGCCATGGNAGAGCAGGATTCATGGCTTAGT
TAGGTAGCTAGATTAGCATTCGCGAAGAGCAGAATGGATTTCAGTTAGCCTCAGGATGGGTGAAAGATGAACGAATTAGT
TACTACTACCATCATTAATTGACTGTGCTGTTCTTCCTGCTTAATCTGAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis