Browse Element(s) Details


Os.55169.1.S1_at

Description gb:AK107618.1
DB_XREF= gi:32992827
TID=Os.55169.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-D01, full insert sequence.
FL= gb:AK107618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0747011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07440NANA10+3925348..3926042expressed protein
LOC_Os10g07450Os.16105.1.S1_at11/1110+3933608..3934170expressed protein
LOC_Os10g07460OsAffx.8479.1.S1_at11/1110+3934703..3942547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g07460Os.50619.1.S1_at1/1110+3934703..3942547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g07470OsAffx.30332.1.S1_at11/1110+3946452..3952705hypothetical protein
LOC_Os10g07470Os.55169.1.S1_at11/1110+3946452..3952705hypothetical protein
LOC_Os10g07480Os.7212.1.S1_at11/1110+3963276..3967603expressed protein
LOC_Os10g07500OsAffx.30333.1.S1_at11/1110+3969758..3971364hypothetical protein
LOC_Os10g07510OsAffx.18167.1.S1_at11/1110+3975935..3977575LOB domain protein 31, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55169.1.S1_at--76--7931Chr10:3952026..3952050 (25 bp)
GGATTGGATCTAGAGCTGCATCTTC
LOC_Os10g07470
Os.55169.1.S1_at--1089--4951Chr10:3952009..3952033 (25 bp)
GCATCTTCACCGCTAGTTTAGTAAA
LOC_Os10g07470
Os.55169.1.S1_at--536--7671Chr10:3951952..3951976 (25 bp)
GGGATTTGTTAGACAGCTGCCTGCT
LOC_Os10g07470
Os.55169.1.S1_at--735--10371Chr10:3951918..3951942 (25 bp)
TTTTTTGCGCTTTTGTCAGCTGGAT
LOC_Os10g07470
Os.55169.1.S1_at--561--3391Chr10:3951902..3951926 (25 bp)
CAGCTGGATTTGTGGCCATGGGATT
LOC_Os10g07470
Os.55169.1.S1_at--696--2811Chr10:3951870..3951894 (25 bp)
AAGATTTGTGCACAAGCCAGCCCAA
LOC_Os10g07470
Os.55169.1.S1_at--944--2371Chr10:3951823..3951847 (25 bp)
AAACGAGCCCAAGCTACAGTTCAAA
LOC_Os10g07470
Os.55169.1.S1_at--293--431Chr10:3951785..3951809 (25 bp)
ATCTTCCAATTTCTCCTGCATGAAT
LOC_Os10g07470
Os.55169.1.S1_at--254--5391Chr10:3951699..3951723 (25 bp)
GAAGCAGCGACCTCGATGTTGTCGG
LOC_Os10g07470
Os.55169.1.S1_at--646--6371Chr10:3951540..3951564 (25 bp)
GATCCCCAAGGTGAGTATTCCCCAT
LOC_Os10g07470
Os.55169.1.S1_at--9--51Chr10:3951524..3951548 (25 bp)
ATTCCCCATGGAGATTTATGCGTTG
LOC_Os10g07470
Target Sequence 
GGATTGGATCTAGAGCTGCATCTTCACCGCTAGTTTAGTAAAGGGTTTATTACCGGGAGCAGATTACAAAATTAGGGATT
TGTTAGACAGCTGCCTGCTGTTTTTTTTTTTTTTGCGCTTTTGTCAGCTGGATTTGTGGCCATGGGATTTTTCTTCAAGA
TTTGTGCACAAGCCAGCCCAAGGCGTGTCCTCCCTTCAGCCACAAACGAGCCCAAGCTACAGTTCAAAAACATAAATCCT
CATCTTCCAATTTCTCCTGCATGAATGGGAGGAAAGCAAGAGAGGCTGTCGGTGAGAGAGAGATCGAGAGAGGATGCGGC
GAAGCAAGAAGCAGCGACCTCGATGTTGTCGGCGTCTTCTCCGCCGGTTGGAGCTCCTGGTTGTGGGCTTGTGGCGCAGC
CAGGGCCAGGCAGCAGAGGTGTTTCTGTTGGATCTCGCCGCTGAAGAGTTGAATCTTGGACCATCAATGAACAACGAGGC
CACATCGATCCCCAAGGTGAGTATTCCCCATGGAGATTTATGCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis