Browse Element(s) Details


Os.7212.1.S1_at

Description gb:AK064809.1
DB_XREF= gi:32974827
TID=Os.7212.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000D20, full insert sequence.
FL= gb:AK064809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0748011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07460OsAffx.8479.1.S1_at11/1110+3934703..3942547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g07460Os.50619.1.S1_at1/1110+3934703..3942547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g07470OsAffx.30332.1.S1_at11/1110+3946452..3952705hypothetical protein
LOC_Os10g07470Os.55169.1.S1_at11/1110+3946452..3952705hypothetical protein
LOC_Os10g07480Os.7212.1.S1_at11/1110+3963276..3967603expressed protein
LOC_Os10g07500OsAffx.30333.1.S1_at11/1110+3969758..3971364hypothetical protein
LOC_Os10g07510OsAffx.18167.1.S1_at11/1110+3975935..3977575LOB domain protein 31, putative, expressed
LOC_Os10g07520OsAffx.18168.1.S1_at11/1110+3988655..3989293hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7212.1.S1_at--801--5911Chr10:3967095..3967119 (25 bp)
GAGCTTGTTTTGCTTGTCGTGGCAA
LOC_Os10g07480
Os.7212.1.S1_at--689--591Chr10:3967181..3967205 (25 bp)
ATGCCTGCACTTACCAGATTCTAGT
LOC_Os10g07480
Os.7212.1.S1_at--62--7111Chr10:3967250..3967274 (25 bp)
GTCAGCCGTCAGTACTAAGAACCAT
LOC_Os10g07480
Os.7212.1.S1_at--682--9791Chr10:3967265..3967289 (25 bp)
TAAGAACCATCCTTTGCCCTGGATT
LOC_Os10g07480
Os.7212.1.S1_at--911--6671Chr10:3967297..3967321 (25 bp)
GTTGCTGTTACTGCTTATACCTCAT
LOC_Os10g07480
Os.7212.1.S1_at--462--10411Chr10:3967311..3967335 (25 bp)
TTATACCTCATGGAACCTCACTGTA
LOC_Os10g07480
Os.7212.1.S1_at--220--211Chr10:3967337..3967361 (25 bp)
ATTTGCCTAGCTACCTCGATGAAGA
LOC_Os10g07480
Os.7212.1.S1_at--623--9651Chr10:3967409..3967433 (25 bp)
TCAGTTAACCGCTAGCTTGTGTTGT
LOC_Os10g07480
Os.7212.1.S1_at--361--7491Chr10:3967432..3967456 (25 bp)
GTGGTTGGTTAGTTCTCTGTACAGA
LOC_Os10g07480
Os.7212.1.S1_at--1159--5251Chr10:3967535..3967559 (25 bp)
GAATGTAATGTGTTGCCCCAGTTCA
LOC_Os10g07480
Os.7212.1.S1_at--664--611Chr10:3967575..3967599 (25 bp)
ATGCTGCAACCGAGTTCAGTTTTGT
LOC_Os10g07480
Target Sequence 
GAGCTTGTTTTGCTTGTCGTGGCAAGCACTGCAGGTGTATATTTTTGCCAACAAAACCTACCACCTATTTGTGTATTATG
TAGATGATGCCTGCACTTACCAGATTCTAGTAGTTTTTGCTTGAGATTTNAGCTGTATCCNATATTNCAGTGTGGTTGTC
AGCCGTCAGTACTAAGAACCATCCTTTGCCCTGGATTTTTTTGGGTTGCTGTTACTGCTTATACCTCATGGAACCTCACT
GTAAATTTGCCTAGCTACCTCGATGAAGATTGAGAAGGTAATGTTGTTAGCGTGAAGAGATTTCTCTTGCCAAGGTTCAG
TTAACCGCTAGCTTGTGTTGTGGTTGGTTAGTTCTCTGTACAGATAACCTGAAAAAAGTTTGGAGTTTGCTGTCAAGTTT
TTGATTGTAAAGTATTTGGATACTCTGTGTGCTAACAGTTTGGAATGTAATGTGTTGCCCCAGTTCAAACAATATCAGTT
TTATGCTGCAACCGAGTTCAGTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis