Browse Element(s) Details


OsAffx.30332.1.S1_at

Description tigr:9638.m00664
TID=OsAffx.30332.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0747011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07440NANA10+3925348..3926042expressed protein
LOC_Os10g07450Os.16105.1.S1_at11/1110+3933608..3934170expressed protein
LOC_Os10g07460OsAffx.8479.1.S1_at11/1110+3934703..3942547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g07460Os.50619.1.S1_at1/1110+3934703..3942547retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g07470OsAffx.30332.1.S1_at11/1110+3946452..3952705hypothetical protein
LOC_Os10g07470Os.55169.1.S1_at11/1110+3946452..3952705hypothetical protein
LOC_Os10g07480Os.7212.1.S1_at11/1110+3963276..3967603expressed protein
LOC_Os10g07500OsAffx.30333.1.S1_at11/1110+3969758..3971364hypothetical protein
LOC_Os10g07510OsAffx.18167.1.S1_at11/1110+3975935..3977575LOB domain protein 31, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30332.1.S1_at--142--51Chr10:3948641..3948665 (25 bp)
ATTGTCTGTCCTGCAAGTGGTAGCC
LOC_Os10g07470
OsAffx.30332.1.S1_at--755--7491Chr10:3948625..3948649 (25 bp)
GTGGTAGCCCTATAAGCATGGATAC
LOC_Os10g07470
OsAffx.30332.1.S1_at--300--3551Chr10:3948601..3948625 (25 bp)
CATCTCGCAGTGTAATTGCCATCTC
LOC_Os10g07470
OsAffx.30332.1.S1_at--508--2851Chr10:3948031..3948051 (21 bp)
AAGTCTGTCCAAGTGGTATGTCCAA
LOC_Os10g07470
OsAffx.30332.1.S1_at--732--771Chr10:3948014..3948038 (25 bp)
ATGTCCAAGTGGTACATCGCACAAA
LOC_Os10g07470
OsAffx.30332.1.S1_at--848--511Chr10:3947999..3948023 (25 bp)
ATCGCACAAACACATGTACGTCTTG
LOC_Os10g07470
OsAffx.30332.1.S1_at--312--311Chr10:3947945..3947969 (25 bp)
ATAGCCAACGTGGACACGCTGTACC
LOC_Os10g07470
OsAffx.30332.1.S1_at--733--10212Chr10:3950137..3950161 (25 bp)
TATTCTGACACAACCTCACTGTGGG
NONE
OsAffx.30332.1.S1_at--961--231Chr10:3947747..3947771 (25 bp)
ATATAGCTGGGTCCCTCGAGGAGAT
LOC_Os10g07470
OsAffx.30332.1.S1_at--924--912Chr10:3947662..3947686 (25 bp)
AGGCATGCATCAGAAGTCCACCGTC
LOC_Os10g07470
OsAffx.30332.1.S1_at--1013--872Chr10:3950404..3950428 (25 bp)
AGGCCTGTGGCACCGTCTACGATAA
NONE
Target Sequence 
ATTGTCTGTCCTGCAAGTGGTAGCCCTATAAGCATGGATACATCTCGCAGTGTAATTGCCATCTCTCCACACGGGAGGTG
GAAAGTCTGTCCAAGTGGTATGTCCAAGTGGTACATCGCACAAACACATGTACGTCTTGTGACAATAGAGGATCCAGATA
TTCCTGAAATAGCCAACGTGGACACGCTGTACCCTATGCAGTCAGCGCCAGTTACCCACCTGACGGGCGATATTGTGGAG
GAACTATATTCTGACACAACCTCACTGTGGGAGAAGCTGCGTGACAATATAGCTGGGTCCCTCGAGGAGATGATGTCTGC
TCTAGACCGAATGCGACAGAAATGCAAACGTATTATGCGGGGGCATAGTACAGGCATGCATCAGAAGTCCACCGTCCCAC
AGGACACAGGTTTGCGGACCCCCTACCGGAACAACCGTCTACCTCTTCTAGGCCTTCCACATCGGCAAGACCCTCAGCTT
CCACACGTCCTGGACGTCGGCAAGGCCTGTGGCACCGTCTACGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis