Browse Element(s) Details


OsAffx.18167.1.S1_at

Description tigr:9638.m00668
TID=OsAffx.18167.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0751011/11LOB domain protein 31, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07470OsAffx.30332.1.S1_at11/1110+3946452..3952705hypothetical protein
LOC_Os10g07470Os.55169.1.S1_at11/1110+3946452..3952705hypothetical protein
LOC_Os10g07480Os.7212.1.S1_at11/1110+3963276..3967603expressed protein
LOC_Os10g07500OsAffx.30333.1.S1_at11/1110+3969758..3971364hypothetical protein
LOC_Os10g07510OsAffx.18167.1.S1_at11/1110+3975935..3977575LOB domain protein 31, putative, expressed
LOC_Os10g07520OsAffx.18168.1.S1_at11/1110+3988655..3989293hypothetical protein
LOC_Os10g07530NANA10+3997301..4000226transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18167.1.S1_at--1021--2471Chr10:3976371..3976390 (20 bp)
AACACCAGGTGGCAGGTCTCCAGTC
LOC_Os10g07510
OsAffx.18167.1.S1_at--977--8491Chr10:3976362..3976386 (25 bp)
TGGCAGGTCTCCAGTCCGAGCTGAA
LOC_Os10g07510
OsAffx.18167.1.S1_at--157--9231Chr10:3976353..3976377 (25 bp)
TCCAGTCCGAGCTGAACTACCTGCA
LOC_Os10g07510
OsAffx.18167.1.S1_at--743--8971Chr10:3976341..3976365 (25 bp)
TGAACTACCTGCAAGGTCACCTCTC
LOC_Os10g07510
OsAffx.18167.1.S1_at--847--9011Chr10:3976332..3976356 (25 bp)
TGCAAGGTCACCTCTCGACGATGGA
LOC_Os10g07510
OsAffx.18167.1.S1_at--906--9391Chr10:3976195..3976219 (25 bp)
TCGTCGGCGGCCAACATTCCGGTCA
LOC_Os10g07510
OsAffx.18167.1.S1_at--326--411Chr10:3976077..3976101 (25 bp)
ATCATCACCCCTATGACCGGATGGG
LOC_Os10g07510
OsAffx.18167.1.S1_at--373--4311Chr10:3976068..3976092 (25 bp)
CCTATGACCGGATGGGCGACGGCTC
LOC_Os10g07510
OsAffx.18167.1.S1_at--156--5751Chr10:3976009..3976033 (25 bp)
GACGGCGGCGACTTGCAAGCGCTGG
LOC_Os10g07510
OsAffx.18167.1.S1_at--737--6131Chr10:3975983..3976007 (25 bp)
GAGGGAGCTTCTTGACCGCCATGGA
LOC_Os10g07510
OsAffx.18167.1.S1_at--175--7651Chr10:3975981..3976005 (25 bp)
GGGAGCTTCTTGACCGCCATGGACG
LOC_Os10g07510
Target Sequence 
AACACCAGGTGGCAGGTCTCCAGTCCGAGCTGAACTACCTGCAAGGTCACCTCTCGACGATGGAGCTGCCGTCGCCGCCG
CCCTACGTCGCCGGGCCGACCCTGGCGCCGCCACAGCCACAGCCACTGATGCCGATGACCGCCGCCGCCAACTTCAACTT
CTCCGACCTGCCATCGTCGTCGGCGGCCAACATTCCGGTCACCGCCGACCTGTCCACCCTCTTTGACCCACTGCCGGCGG
CGCAGCCGCAGTGGGGACTATACCAGCAGCAGCAACACCACCACCAGCAGCTGCATCATCACCCCTATGACCGGATGGGC
GACGGCTCGTCGAGCAGCAGAGGCGGCGACGACGATGGCAGCGACGGCGGCGACTTGCAAGCGCTGGCGAGGGAGCTTCT
TGACCGCCATGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis