Browse Element(s) Details


Os.16117.1.S1_s_at

Description gb:BX928288
DB_XREF= gi:41883173
DB_XREF=BX928288
CLONE=y659c03p5
TID=Os.16117.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16117 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:O15212 (H.sapiens) PFD6_HUMAN Prefoldin subunit 6
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1486011/11KE2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14830OsAffx.12041.1.S1_at11/112+8240993..8242952hypothetical protein
LOC_Os02g14840Os.33370.1.S1_at10/112+8244346..8248443Potassium channel KAT1, putative, expressed
LOC_Os02g14850Os.55487.1.S1_at11/112+8256455..8257567expressed protein
LOC_Os02g14860OsAffx.12042.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14860Os.16117.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14870OsAffx.12043.1.S1_at11/112+8268232..8270188hypothetical protein
LOC_Os02g14880OsAffx.24261.1.S1_at11/112+8289301..8289687hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16117.1.S1_s_at--581--9291Chr02:8262675..8262699 (25 bp)
TCCGCGAGATGCAGCGCGACCTCGA
LOC_Os02g14860
Os.16117.1.S1_s_at--727--4611Chr02:8262678..8262702 (25 bp)
GCGAGATGCAGCGCGACCTCGAGTC
LOC_Os02g14860
Os.16117.1.S1_s_at--84--8451Chr02:8262706..8262730 (25 bp)
GGCCAACGCCCTCAGCAAGATCCAG
LOC_Os02g14860
Os.16117.1.S1_s_at--677--5171Chr02:8262720..8262841 (25 bp)
GCAAGATCCAGAAAGACATCTCCAA
LOC_Os02g14860
Os.16117.1.S1_s_at--348--3231Chr02:8262721..8262842 (25 bp)
CAAGATCCAGAAAGACATCTCCAAG
LOC_Os02g14860
Os.16117.1.S1_s_at--422--2731Chr02:8262840..8262864 (25 bp)
AAGAACCACCAGGTCCGCAAGCAGT
LOC_Os02g14860
Os.16117.1.S1_s_at--292--1711Chr02:8262847..8262871 (25 bp)
ACCAGGTCCGCAAGCAGTACACCAT
LOC_Os02g14860
Os.16117.1.S1_s_at--781--1031Chr02:8262850..8262874 (25 bp)
AGGTCCGCAAGCAGTACACCATCCA
LOC_Os02g14860
Os.16117.1.S1_s_at--363--1171Chr02:8262862..8262886 (25 bp)
AGTACACCATCCAGGTCGGCGAGAA
LOC_Os02g14860
Os.16117.1.S1_s_at--332--7031Chr02:8262863..8262887 (25 bp)
GTACACCATCCAGGTCGGCGAGAAC
LOC_Os02g14860
Os.16117.1.S1_s_at--109--9871Chr02:8262864..8262888 (25 bp)
TACACCATCCAGGTCGGCGAGAACG
LOC_Os02g14860
Target Sequence 
TCCGCGAGATGCAGCGCGACCTCGAGTCCNAGGCCAACGCCCTCAGCAAGATCCAGAAAGACATCTCCAAGAACCACCAG
GTCCGCAAGCAGTACACCATCCAGGTCGGCGAGAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16117.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis