Browse Element(s) Details


Os.33370.1.S1_at

Description gb:AK100808.1
DB_XREF= gi:32986017
TID=Os.33370.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121M17, full insert sequence.
FL= gb:AK100808.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1484010/11Potassium channel KAT1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14810OsAffx.24259.1.S1_at11/112+8227855..8230367expressed protein
LOC_Os02g14820OsAffx.24260.1.S1_at11/112+8233527..8234627hypothetical protein
LOC_Os02g14830OsAffx.12041.1.S1_at11/112+8240993..8242952hypothetical protein
LOC_Os02g14840Os.33370.1.S1_at10/112+8244346..8248443Potassium channel KAT1, putative, expressed
LOC_Os02g14850Os.55487.1.S1_at11/112+8256455..8257567expressed protein
LOC_Os02g14860OsAffx.12042.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14860Os.16117.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14870OsAffx.12043.1.S1_at11/112+8268232..8270188hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009860biological_processpollen tube growth
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33370.1.S1_at--908--7891Chr02:8245519..8245543 (25 bp)
GGTTCTTTATGTAACATACCCCAGC
LOC_Os02g14840
Os.33370.1.S1_at--39--1691Chr02:8245497..8245521 (25 bp)
AGCCATTTACTTGCCGCACAGCGGA
LOC_Os02g14840
Os.33370.1.S1_at--133--5131Chr02:8245482..8245506 (25 bp)
GCACAGCGGAGCTATCACAGCTTTT
LOC_Os02g14840
Os.33370.1.S1_at--517--5391Chr02:8245286..8245310 (25 bp)
GAAGCTACGAGAAAGTTTACCTGAC
LOC_Os02g14840
Os.33370.1.S1_at--100--8951Chr02:8245265..8245289 (25 bp)
TGACATGAATCAACCAGACCGAAGA
LOC_Os02g14840
Os.33370.1.S1_at--1087--5171Chr02:8245233..8245257 (25 bp)
GCAAGTATGAGCTATTCCACGTTCC
LOC_Os02g14840
Os.33370.1.S1_at--965--10211Chr02:8245221..8245245 (25 bp)
TATTCCACGTTCCTCGAGAAGCATG
LOC_Os02g14840
Os.33370.1.S1_at--1053--7651Chr02:8245152..8245176 (25 bp)
GGGATTCTAGTAACAACACTCCAGT
LOC_Os02g14840
Os.33370.1.S1_at--420--6151Chr02:8245122..8245146 (25 bp)
GAGGTGACAGATATTCCAGACAGTT
LOC_Os02g14840
Os.33370.1.S1_at--633--6771NONE
GTTACTTGTAGAAGCAACCCGATCT
NONE
Os.33370.1.S1_at--754--5151Chr02:8245087..8245111 (25 bp)
GCAACCCGATCTTCGGCATCAGAAA
LOC_Os02g14840
Target Sequence 
GGTTCTTTATGTAACATACCCCAGCCATTTACTTGCCGCACAGCGGAGCTATCACAGCTTTTAAGAATAAGCAAAACAAG
GCTTAGAGAGATCATTGAAGAAAACAGGGAAGACAGTAACATTCTAATGAACAACCTAGTTCAGAAGCTGAAGCTACGAG
AAAGTTTACCTGACATGAATCAACCAGACCGAAGATTCTTGAGCAAGTATGAGCTATTCCACGTTCCTCGAGAAGCATGG
CTGCTGAAAAAGTCACAACTACATTACACAGAGCACACAAGTAGGGATTCTAGTAACAACACTCCAGTATTTGGAGGTGA
CAGATATTCCAGACAGTTACTTGTAGAAGCAACCCGATCTTCGGCATCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis