Browse Element(s) Details


Os.16139.1.S1_at

Description gb:AK103360.1
DB_XREF= gi:32988569
TID=Os.16139.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126M21, full insert sequence.
FL= gb:AK103360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4808010/11Serine/threonine-protein kinase receptor precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48040OsAffx.2994.1.S1_at10/112+29399394..29401166hypothetical protein
LOC_Os02g48050OsAffx.2995.1.S1_at11/112+29409281..29410874hypothetical protein
LOC_Os02g48050OsAffx.5258.1.S1_x_at2/112+29409281..29410874hypothetical protein
LOC_Os02g48060Os.56232.1.S1_at11/112+29415532..29417120Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g48070OsAffx.24775.1.S1_at11/112+29421140..29421424hypothetical protein
LOC_Os02g48080Os.16139.1.S1_at10/112+29423895..29426578Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os02g48090OsAffx.12545.1.S1_at11/112+29428158..29428742hypothetical protein
LOC_Os02g48100OsAffx.12546.1.S1_x_at11/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100Os.17476.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100OsAffx.12546.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48110Os.9747.1.S1_at9/112+29446070..29451884dnaK protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16139.1.S1_at--97--9151Chr02:29426099..29426123 (25 bp)
TGCGTGCAGGAGAGCCCCGAGCTCC
LOC_Os02g48080
Os.16139.1.S1_at--431--9091Chr02:29426145..29426169 (25 bp)
TGCTCATGCTCATCAGCGACCAGAT
LOC_Os02g48080
Os.16139.1.S1_at--137--2771Chr02:29426255..29426279 (25 bp)
AAGACGGAGACCACCAAGACGCAGT
LOC_Os02g48080
Os.16139.1.S1_at--250--2771Chr02:29426270..29426294 (25 bp)
AAGACGCAGTCCGTCAACGACGTGT
LOC_Os02g48080
Os.16139.1.S1_at--849--2591Chr02:29426285..29426309 (25 bp)
AACGACGTGTCCATCTCCATGATCG
LOC_Os02g48080
Os.16139.1.S1_at--174--471Chr02:29426297..29426321 (25 bp)
ATCTCCATGATCGAGCCACGATAAA
LOC_Os02g48080
Os.16139.1.S1_at--847--2411Chr02:29426471..29426495 (25 bp)
AAAAAATCGACAGGGAGCTTGACAG
LOC_Os02g48080
Os.16139.1.S1_at--1053--8071Chr02:29426484..29426508 (25 bp)
GGAGCTTGACAGATTGTTTCATTCT
LOC_Os02g48080
Os.16139.1.S1_at--146--10791Chr02:29426497..29426521 (25 bp)
TTGTTTCATTCTTTGGTCGTCATAC
LOC_Os02g48080
Os.16139.1.S1_at--352--7191Chr02:29426512..29426536 (25 bp)
GTCGTCATACCCACAAGTACTTGTA
LOC_Os02g48080
Os.16139.1.S1_at--36--7031NONE
GTACTTGTAAATATCATCTGTTCAC
NONE
Target Sequence 
TGCGTGCAGGAGAGCCCCGAGCTCCGGCCGNACCATGTCCAACGTGGTGCTCATGCTCATCAGCGACCAGATGCAGCTGC
CGGAGCCCGCGCAGCCGCCGCTGTTCGCGGCGCGGGAGATGAAGAAGGTCTCGGCGTCGGAGTTCTCGCTGGCGATGAAG
ACGGAGACCACCAAGACGCAGTCCGTCAACGACGTGTCCATCTCCATGATCGAGCCACGATAAAAAAGAAGAAAGAAAAA
AAAANCGTCGTTTTTTTTCTTCTTTTTTTATTTCTCTCTCTCTCTCTCTCNNNNNNNNNNNNNNNNNNNNAAACTGTGTT
TATTACGAGAGTTTTGATAAGCTAGTGGTGATGGAGATTGAGANAAATAAGAAACAAATAACAGCGTGGAGATAAAAAAT
CGACAGGGAGCTTGACAGATTGTTTCATTCTTTGGTCGTCATACCCACAAGTACTTGTAAATATCATCTGTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis