Browse Element(s) Details


OsAffx.12545.1.S1_at

Description tigr:9630.m04685
TID=OsAffx.12545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4809011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48050OsAffx.2995.1.S1_at11/112+29409281..29410874hypothetical protein
LOC_Os02g48050OsAffx.5258.1.S1_x_at2/112+29409281..29410874hypothetical protein
LOC_Os02g48060Os.56232.1.S1_at11/112+29415532..29417120Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g48070OsAffx.24775.1.S1_at11/112+29421140..29421424hypothetical protein
LOC_Os02g48080Os.16139.1.S1_at10/112+29423895..29426578Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os02g48090OsAffx.12545.1.S1_at11/112+29428158..29428742hypothetical protein
LOC_Os02g48100OsAffx.12546.1.S1_x_at11/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100Os.17476.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48100OsAffx.12546.1.S1_at10/112+29441995..29445575Helicase conserved C-terminal domain containing protein, expressed
LOC_Os02g48110Os.9747.1.S1_at9/112+29446070..29451884dnaK protein, expressed
LOC_Os02g48116Os.49403.1.S1_at11/112+29452225..29455248expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12545.1.S1_at--108--8611Chr02:29428696..29428720 (25 bp)
TGGTCGATCACAATGACGGCGGTGA
LOC_Os02g48090
OsAffx.12545.1.S1_at--336--7331Chr02:29428632..29428656 (25 bp)
GTGCAGCAACTTCTCATTAGCTGTG
LOC_Os02g48090
OsAffx.12545.1.S1_at--469--3591Chr02:29428618..29428642 (25 bp)
CATTAGCTGTGATGTTGACGGCGCG
LOC_Os02g48090
OsAffx.12545.1.S1_at--399--3771Chr02:29428535..29428559 (25 bp)
CTCGGGCCTCCAGAGTTGGTGCGCA
LOC_Os02g48090
OsAffx.12545.1.S1_at--956--5851Chr02:29428508..29428532 (25 bp)
GGTGACGACGATGAACCTTCGAAAT
LOC_Os02g48090
OsAffx.12545.1.S1_at--187--6311Chr02:29428499..29428523 (25 bp)
GATGAACCTTCGAAATTCCCATGGA
LOC_Os02g48090
OsAffx.12545.1.S1_at--842--92Chr07:7383186..7383205 (20 bp)
ATTCCCATGGAATCAATCCAGCAGC
NONE
OsAffx.12545.1.S1_at--136--1491Chr02:29428445..29428469 (25 bp)
AGCAAGGACAACGTCAATCTCCCTT
LOC_Os02g48090
OsAffx.12545.1.S1_at--803--9231Chr02:29428408..29428432 (25 bp)
TCCATCTCCTCGAGCCTTATAGAGC
LOC_Os02g48090
OsAffx.12545.1.S1_at--467--2451Chr02:29428333..29428357 (25 bp)
AAAATATATCCTGCATTCAACCCTC
LOC_Os02g48090
OsAffx.12545.1.S1_at--562--71Chr02:29428286..29428310 (25 bp)
ATTGCCGCGTTGTCACTAACCGGTC
LOC_Os02g48090
Target Sequence 
TGGTCGATCACAATGACGGCGGTGAGGCGGAGTCAGAGTCGGGCATAGTGGTGCCCCCGCACAAGTGCAGCAACTTCTCA
TTAGCTGTGATGTTGACGGCGCGGCAGGTGTGCCCGGTGGTGGAGGGCCACGATGCTGCTGGATCTGCCTCCCTCACCGA
GCTCGGGCCTCCAGAGTTGGTGCGCAGAGGTGACGACGATGAACCTTCGAAATTCCCATGGAATCAATCCAGCAGCAAAG
GGTGGGGGGGCAGCAAGGACAACGTCAATCTCCCTTCCTCCTTTCTCCTCCATCTCCTCGAGCCTTATAGAGCTCCCGCT
TCGCCGTCGAGCTCCTCATCGCCTGTAGCGGCACCACTACAAAAAAATATATCCTGCATTCAACCCTCAGTGCGCCCCGA
GTTGTTCGCCATTGCCGCGTTGTCACTAACCGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis