Browse Element(s) Details


OsAffx.5258.1.S1_x_at

Description tigr:9635.m00858
TID=OsAffx.5258.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g480502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48020OsAffx.24774.1.S1_at11/112+29390261..29390748hypothetical protein
LOC_Os02g48030NANA2+29394455..29395504hypothetical protein
LOC_Os02g48040OsAffx.2994.1.S1_at10/112+29399394..29401166hypothetical protein
LOC_Os02g48050OsAffx.2995.1.S1_at11/112+29409281..29410874hypothetical protein
LOC_Os02g48050OsAffx.5258.1.S1_x_at2/112+29409281..29410874hypothetical protein
LOC_Os02g48060Os.56232.1.S1_at11/112+29415532..29417120Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g48070OsAffx.24775.1.S1_at11/112+29421140..29421424hypothetical protein
LOC_Os02g48080Os.16139.1.S1_at10/112+29423895..29426578Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os02g48090OsAffx.12545.1.S1_at11/112+29428158..29428742hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5258.1.S1_x_at--795--1411Chr07:4677857..4677881 (25 bp)
AGACAGACCCCGTATGGTGCCTGTG
NONE
OsAffx.5258.1.S1_x_at--1046--5631Chr07:4677856..4677880 (25 bp)
GACAGACCCCGTATGGTGCCTGTGG
NONE
OsAffx.5258.1.S1_x_at--582--2131Chr07:4677855..4677879 (25 bp)
ACAGACCCCGTATGGTGCCTGTGGA
NONE
OsAffx.5258.1.S1_x_at--1071--3411Chr07:4677854..4677878 (25 bp)
CAGACCCCGTATGGTGCCTGTGGAG
NONE
OsAffx.5258.1.S1_x_at--1130--4192Chr02:29409780..29409800 (21 bp)
CCCGTATGGTGCCTGTGGAGGCCGA
LOC_Os02g48050
OsAffx.5258.1.S1_x_at--720--4012Chr02:29409780..29409802 (23 bp)
CGTATGGTGCCTGTGGAGGCCGACA
LOC_Os02g48050
OsAffx.5258.1.S1_x_at--318--451Chr07:4677816..4677840 (25 bp)
ATCTAGTGTCATCTTTGATCTCGAT
NONE
OsAffx.5258.1.S1_x_at--755--6411Chr07:4677800..4677824 (25 bp)
GATCTCGATGAACTCATACTCGAGG
NONE
OsAffx.5258.1.S1_x_at--51--471Chr07:4677799..4677823 (25 bp)
ATCTCGATGAACTCATACTCGAGGA
NONE
OsAffx.5258.1.S1_x_at--272--9491Chr07:4677798..4677822 (25 bp)
TCTCGATGAACTCATACTCGAGGAG
NONE
OsAffx.5258.1.S1_x_at--386--9391Chr07:4677796..4677820 (25 bp)
TCGATGAACTCATACTCGAGGAGGA
NONE
Target Sequence 
AGACAGACCCCGTATGGTGCCTGTGGAGGCCGACAAGAGGGATCTAGTGTCATCTTTGATCTCGATGAACTCATACTCGA
GGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5258.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis