Browse Element(s) Details


Os.16140.1.S1_at

Description gb:AK121012.1
DB_XREF= gi:37990635
TID=Os.16140.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.16140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023047D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047D20, full insert sequence.
FL= gb:AK121012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0445010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04380NANA7+1941686..1943505hypothetical protein
LOC_Os07g04390Os.50619.1.S1_at1/117+1944645..1950114hypothetical protein
LOC_Os07g04400OsAffx.5207.1.S1_at11/117+1950488..1951139hypothetical protein
LOC_Os07g04410NANA7+1951766..1952305Cytochrome P450 90D2, putative
LOC_Os07g04420Os.54102.1.S1_x_at9/117+1954422..1957966hypothetical protein
LOC_Os07g04420Os.53654.1.S1_at3/117+1954422..1957966hypothetical protein
LOC_Os07g04420Os.27698.1.A1_x_at1/117+1954422..1957966hypothetical protein
LOC_Os07g04430NANA7+1958813..1962780expressed protein
LOC_Os07g04440Os.49250.1.S1_at8/117+1963593..1964641expressed protein
LOC_Os07g04450Os.16140.1.S1_at10/117+1968074..1970246expressed protein
LOC_Os07g04460NANA7+1972628..1972867hypothetical protein
LOC_Os07g04470OsAffx.16080.1.S1_at10/117+1974591..1975788GRF zinc finger family protein
LOC_Os07g04480Os.49936.1.S1_at11/117+1976356..1979759SWIM zinc finger family protein, expressed
LOC_Os07g04490OsAffx.5209.1.S1_at10/117+1981923..1983107hypothetical protein
LOC_Os07g04500Os.9770.1.S1_at10/117+1983792..1986156expressed protein
LOC_Os07g04510OsAffx.31549.2.S1_x_at11/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04510OsAffx.31549.1.S1_x_at4/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04520OsAffx.28262.1.S1_x_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04520OsAffx.28262.1.S1_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S1_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S2_at11/117+1995047..2004298GYF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16140.1.S1_at--562--3791NONE
CTCCACCCCGAGGATAAGTTGAGTG
NONE
Os.16140.1.S1_at--166--6131Chr07:1969737..1969761 (25 bp)
GAGTGGCAACACAAATCCTAAGATT
LOC_Os07g04450
Os.16140.1.S1_at--480--6531Chr07:1969758..1969782 (25 bp)
GATTAAGCCCCTTACTTTCCATAAT
LOC_Os07g04450
Os.16140.1.S1_at--114--6191Chr07:1969789..1969813 (25 bp)
GAGGACGCTCGCATTATGTTTGAGA
LOC_Os07g04450
Os.16140.1.S1_at--1154--6951Chr07:1969937..1969961 (25 bp)
GTAGCGGAACCGATGGTGGCATTTC
LOC_Os07g04450
Os.16140.1.S1_at--248--2411Chr07:1969972..1969996 (25 bp)
AAACAGGATTGTGATTGCGGCGGCT
LOC_Os07g04450
Os.16140.1.S1_at--684--10611Chr07:1969999..1970023 (25 bp)
TTCTGGATGCGTTGTTGGTACTGTT
LOC_Os07g04450
Os.16140.1.S1_at--465--8671Chr07:1970023..1970047 (25 bp)
TGTGATGGGCGTTTTTCTTTGTCAG
LOC_Os07g04450
Os.16140.1.S1_at--101--2791Chr07:1970065..1970089 (25 bp)
AAGAGAACCATGCATCGACTGCCGC
LOC_Os07g04450
Os.16140.1.S1_at--262--531Chr07:1970078..1970102 (25 bp)
ATCGACTGCCGCTATTATCATTATA
LOC_Os07g04450
Os.16140.1.S1_at--711--5551Chr07:1970132..1970156 (25 bp)
GAAACCTCTAGCGTGCATGTTTTTT
LOC_Os07g04450
Target Sequence 
CTCCACCCCGAGGATAAGTTGAGTGGCAACACAAATCCTAAGATTAAGCCCCTTACTTTCCATAATGCTGAGGAGGACGC
TCGCATTATGTTTGAGAACATCAATGAGAGAGCACGAGTGGTAGCGGAACCGATGGTGGCATTTCGGAGGAGGCAAAACA
GGATTGTGATTGCGGCGGCTGCTTCTGGATGCGTTGTTGGTACTGTTGTGATGGGCGTTTTTCTTTGTCAGGATTGAAAC
AGCTAGATAAGAGAACCATGCATCGACTGCCGCTATTATCATTATAACTATGACTTTTAATTAAGACTTTCTTATGAAAC
CTCTAGCGTGCATGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis