Browse Element(s) Details


Os.9770.1.S1_at

Description gb:AK120248.1
DB_XREF= gi:37989871
TID=Os.9770.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044N05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044N05, full insert sequence.
FL= gb:AK120248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0450010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04430NANA7+1958813..1962780expressed protein
LOC_Os07g04440Os.49250.1.S1_at8/117+1963593..1964641expressed protein
LOC_Os07g04450Os.16140.1.S1_at10/117+1968074..1970246expressed protein
LOC_Os07g04460NANA7+1972628..1972867hypothetical protein
LOC_Os07g04470OsAffx.16080.1.S1_at10/117+1974591..1975788GRF zinc finger family protein
LOC_Os07g04480Os.49936.1.S1_at11/117+1976356..1979759SWIM zinc finger family protein, expressed
LOC_Os07g04490OsAffx.5209.1.S1_at10/117+1981923..1983107hypothetical protein
LOC_Os07g04500Os.9770.1.S1_at10/117+1983792..1986156expressed protein
LOC_Os07g04510OsAffx.31549.2.S1_x_at11/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04510OsAffx.31549.1.S1_x_at4/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04520OsAffx.28262.1.S1_x_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04520OsAffx.28262.1.S1_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S1_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S2_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04540OsAffx.28263.1.S1_at11/117+2004905..2005690hypothetical protein
LOC_Os07g04550Os.46529.1.S1_a_at11/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g04550Os.17736.1.S1_at1/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9770.1.S1_at--453--10691NONE
TTCCACCCCGAGGAGAAGCTGAGCA
NONE
Os.9770.1.S1_at--35--1611Chr07:1985499..1985523 (25 bp)
AGCTGAGCAGCATGACATCTTCTAA
LOC_Os07g04500
Os.9770.1.S1_at--768--1371Chr07:1985581..1985605 (25 bp)
AGAGCGGTCTCGGATTTTTGCCCAA
LOC_Os07g04500
Os.9770.1.S1_at--970--2951Chr07:1985779..1985803 (25 bp)
AATGGTTGCTTCTAGCTTGGGCGCA
LOC_Os07g04500
Os.9770.1.S1_at--1146--4611Chr07:1985804..1985828 (25 bp)
GCGATTGGAATTTTTGCCCTTCTCA
LOC_Os07g04500
Os.9770.1.S1_at--752--6811Chr07:1985882..1985906 (25 bp)
GTTTTAGATGATCACCAGCTGGCCT
LOC_Os07g04500
Os.9770.1.S1_at--722--8431Chr07:1985902..1985926 (25 bp)
GGCCTAGTGCCTTTATCTATTTTAG
LOC_Os07g04500
Os.9770.1.S1_at--92--7011Chr07:1985975..1985999 (25 bp)
GTACTGCTATATCGCTGTCCCAGAA
LOC_Os07g04500
Os.9770.1.S1_at--471--9791Chr07:1986017..1986041 (25 bp)
TAAGAGCCCTCTTTGCTTGTGTATC
LOC_Os07g04500
Os.9770.1.S1_at--417--6912Chr07:1986056..1986080 (25 bp)
GTATCCCTGTCATGTATTTTCTTCT
LOC_Os07g04500
Os.9770.1.S1_at--268--6751Chr07:1986115..1986139 (25 bp)
GTTCATGCGTGCCTATGCAACAGTT
LOC_Os07g04500
Target Sequence 
TTCCACCCCGAGGAGAAGCTGAGCAGCATGACATCTTCTAAGACTAAAACTCCTGTTGATGACAACTGTTTTGAATTGCT
TGGGGACAAGTATTTTGAAGAGCGGTCTCGGATTTTTGCCCAATTGGTTAAGGAAGATGCACGGCGCACGGAGGAGCAGA
TCGCTGCATACAAGAAGCTGAAGAGGGCAATGGTTGCTTCTAGCTTGGGCGCAGCGATTGGAATTTTTGCCCTTCTCATC
AGATATAACGAGTAGTATATCTGATACTGTTGTCTAGTACTAGTCTCTTGAGTTTTAGATGATCACCAGCTGGCCTAGTG
CCTTTATCTATTTTAGAGCACTCTGTTTATCTGATTATGCAGTTAATTTTGGTGTTGCACNCTGGTACTGCTATATCGCT
GTCCCAGAATATTGGAGGAACTTAATTAAGAGCCCTCTTTGCTTGTGTATCATTGAACATGGTAAGTATCCCTGTCATGT
ATTTTCTTCTTCAAGACAAATTTCATCCTTNGTNTGCTACTGTCGTTCATGCGTGCCTATGCAACAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis