Browse Element(s) Details


Os.16305.1.S1_at

Description gb:AK071546.1
DB_XREF= gi:32981569
TID=Os.16305.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100C12, full insert sequence.
FL= gb:AK071546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1016011/11Cytochrome P450 CYP99A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10110NANA4+5440620..5441805retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.1651.1.S1_at4/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.1651.1.S1_x_at3/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120Os.51491.1.S1_at1/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.8201.1.S1_x_at1/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10130OsAffx.3761.1.S1_x_at11/114+5447866..5450737hypothetical protein
LOC_Os04g10130OsAffx.3761.1.S1_at11/114+5447866..5450737hypothetical protein
LOC_Os04g10140OsAffx.3762.1.S1_at11/114+5459004..5459727hypothetical protein
LOC_Os04g10140Os.37711.3.S1_x_at1/114+5459004..5459727hypothetical protein
LOC_Os04g10150Os.57362.1.S1_at10/114+5463453..5464267expressed protein
LOC_Os04g10160Os.16305.1.S1_at11/114+5464874..5466769Cytochrome P450 CYP99A1, putative, expressed
LOC_Os04g10170OsAffx.25949.1.S1_at11/114+5484368..5484840hypothetical protein
LOC_Os04g10180OsAffx.25950.1.S1_at11/114+5485954..5487442hypothetical protein
LOC_Os04g10190NANA4+5488983..5491937retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16305.1.S1_at--580--6351Chr04:5466351..5466375 (25 bp)
GATGCCCTGGTGATACATTTGGTAT
LOC_Os04g10160
Os.16305.1.S1_at--39--1831Chr04:5466400..5466424 (25 bp)
ACGCCTTCTCTACTACTTCGATTGG
LOC_Os04g10160
Os.16305.1.S1_at--94--10871Chr04:5466421..5466445 (25 bp)
TTGGAGCCTCCCTGCCGGAATGCAG
LOC_Os04g10160
Os.16305.1.S1_at--388--8211Chr04:5466437..5466461 (25 bp)
GGAATGCAGCCGGATGATGTTGACA
LOC_Os04g10160
Os.16305.1.S1_at--804--7991Chr04:5466448..5466472 (25 bp)
GGATGATGTTGACATGGACTTCGTC
LOC_Os04g10160
Os.16305.1.S1_at--724--9391Chr04:5466471..5466495 (25 bp)
TCGTCACCGCCACAACTAGGAGAAA
LOC_Os04g10160
Os.16305.1.S1_at--305--5431Chr04:5466496..5466520 (25 bp)
GAACCATCTTCAGCTAGTGGCGTCG
LOC_Os04g10160
Os.16305.1.S1_at--255--8351Chr04:5466514..5466538 (25 bp)
GGCGTCGCCATATAAGTTGGCTCCT
LOC_Os04g10160
Os.16305.1.S1_at--851--6611Chr04:5466529..5466553 (25 bp)
GTTGGCTCCTATCCAAATCTGATGG
LOC_Os04g10160
Os.16305.1.S1_at--923--3051Chr04:5466544..5466568 (25 bp)
AATCTGATGGATATACGGCTCCTAC
LOC_Os04g10160
Os.16305.1.S1_at--986--10171Chr04:5466555..5466579 (25 bp)
TATACGGCTCCTACCCAAAGCTGAT
LOC_Os04g10160
Target Sequence 
GATGCCCTGGTGATACATTTGGTATGNTCTTGNTGGAGCTCATCGTGGCACGCCTTCTCTACTACTTCGATTGGAGCCTC
CCTGCCGGAATGCAGCCGGATGATGTTGACATGGACTTCGTCGTCACCGCCACAACTAGGAGAAAGAACCATCTTCAGCT
AGTGGCGTCGCCATATAAGTTGGCTCCTATCCAAATCTGATGGATATACGGCTCCTACCCAAAGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis