Browse Element(s) Details


Os.16323.2.S1_x_at

Description gb:NM_187076.1
DB_XREF= gi:34901237
GEN=P0475E07.28
TID=Os.16323.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) phosphoglucomutase-like protein (P0475E07.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) phosphoglucomutase-like protein (P0475E07.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2661011/11phosphoglucomutase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26600OsAffx.5451.2.S1_s_at11/117+15319861..15321403hypothetical protein
LOC_Os07g26600OsAffx.5451.1.S1_x_at4/117+15319861..15321403hypothetical protein
LOC_Os07g26610Os.16323.2.S1_x_at11/117+15337303..15349470phosphoglucomutase, putative, expressed
LOC_Os07g26610Os.16323.1.S1_at7/117+15337303..15349470phosphoglucomutase, putative, expressed
LOC_Os07g26620OsAffx.28602.1.S1_at11/117+15355679..15356019hypothetical protein
LOC_Os07g26630Os.8118.1.S1_at11/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26630Os.44151.1.S1_x_at3/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26630Os.31191.2.S1_x_at1/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.44151.1.S1_x_at11/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.31191.2.S1_x_at1/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26650OsAffx.28603.1.S1_at11/117+15374237..15374482hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0016868molecular_functionintramolecular transferase activity, phosphotransferases
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16323.2.S1_x_at--587--6131Chr07:15347161..15347185 (25 bp)
GAGGGAAGCATCATCGTTTCAAGCG
LOC_Os07g26610
Os.16323.2.S1_x_at--407--8331Chr07:15347390..15347414 (25 bp)
GGCTCGATGATGGTGCATATCTTAT
LOC_Os07g26610
Os.16323.2.S1_x_at--1090--8931Chr07:15347894..15347918 (25 bp)
TGACTGATTTGGTCGAGGGCCTTGA
LOC_Os07g26610
Os.16323.2.S1_x_at--1162--4311Chr07:15347913..15347937 (25 bp)
CCTTGAGGAGGCTTCTGTGACAGTG
LOC_Os07g26610
Os.16323.2.S1_x_at--278--6511Chr07:15348824..15348848 (25 bp)
GATATGGTGGCTGGTTCTTATTGCG
LOC_Os07g26610
Os.16323.2.S1_x_at--1152--9551Chr07:15348839..15348863 (25 bp)
TCTTATTGCGGTTATCCCTCCATGA
LOC_Os07g26610
Os.16323.2.S1_x_at--1050--1211Chr07:15348867..15348889 (23 bp)
AGTTCTTCCCCTTAACATCGAGGCG
LOC_Os07g26610
Os.16323.2.S1_x_at--1117--4551Chr07:15348970..15348994 (25 bp)
GCGCCGAGCAAGGATGATGCCATTA
LOC_Os07g26610
Os.16323.2.S1_x_at--990--6351Chr07:15348985..15349009 (25 bp)
GATGCCATTAAGCTTGGGCTTGCAG
LOC_Os07g26610
Os.16323.2.S1_x_at--129--7591Chr07:15349000..15349024 (25 bp)
GGGCTTGCAGTGCTTACTGCCGTAA
LOC_Os07g26610
Os.16323.2.S1_x_at--1009--1971Chr07:15349015..15349039 (25 bp)
ACTGCCGTAAGTGAATTTCCAGCAT
LOC_Os07g26610
Target Sequence 
GAGGGAAGCATCATCGTTTCAAGCGAGGGTACAAGAATGTAATAGATGAGGCTATTCGTCTGAATACTATTGGTGAGGAG
TCACATTTAGCTATGGAAACAAGTGGCCATGGAGCACTGAAAGAGAATCACTGGCTCGATGATGGTGCATATCTTATGGT
TAAACTTTTGAATAAGCTTGCTGCAGCTAGAATATTGAATCCAAACGTTGGTAGTAAAGTTTTGACTGATTTGGTCGAGG
GCCTTGAGGAGGCTTCTGTGACAGTGGAGATAAGATTGAAGATTGATCAGAATCATGCAGATTTGAAAGGGGGGTCCTTC
CGTGATTACGGAGAAGCTGTCTTGAAACATTTGGAGAATGCAATCAGTAAAGATGAATATCTGTGCAAAGCACCGAAGAA
CTATGAAGGCGTAAGAGTTTCAGGATATGGTGGCTGGTTCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTA
ACATCGAGGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCCGTAAGTGAATTTCCAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16323.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis