Browse Element(s) Details


Os.8118.1.S1_at

Description gb:AK072632.1
DB_XREF= gi:32982655
TID=Os.8118.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative plasma membrane intrinsic protein (P0475E07.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132K03, full insert sequence.
FL= gb:AK072632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2663011/11Aquaporin PIP2.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26610Os.16323.2.S1_x_at11/117+15337303..15349470phosphoglucomutase, putative, expressed
LOC_Os07g26610Os.16323.1.S1_at7/117+15337303..15349470phosphoglucomutase, putative, expressed
LOC_Os07g26620OsAffx.28602.1.S1_at11/117+15355679..15356019hypothetical protein
LOC_Os07g26630Os.8118.1.S1_at11/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26630Os.44151.1.S1_x_at3/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26630Os.31191.2.S1_x_at1/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.44151.1.S1_x_at11/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.31191.2.S1_x_at1/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26650OsAffx.28603.1.S1_at11/117+15374237..15374482hypothetical protein
LOC_Os07g26660Os.31191.2.S1_x_at11/117+15375222..15376595expressed protein
LOC_Os07g26660Os.31191.1.S1_at10/117+15375222..15376595expressed protein
LOC_Os07g26660Os.55453.1.S1_at1/117+15375222..15376595expressed protein
LOC_Os07g26660Os.44151.1.S1_x_at1/117+15375222..15376595expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006833biological_processwater transport
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8118.1.S1_at--564--5711Chr07:15357953..15358081 (25 bp)
GACTCACATGTTCCCGTGTTGGCTC
LOC_Os07g26630
Os.8118.1.S1_at--789--9331Chr07:15358172..15358196 (25 bp)
TCGCCGTGGTCTACAACAACAACAA
LOC_Os07g26630
Os.8118.1.S1_at--801--3251Chr07:15358428..15358452 (25 bp)
CAACGCGTAGTTGAGCTCGTCTGGT
LOC_Os07g26630
Os.8118.1.S1_at--776--10031Chr07:15358435..15358459 (25 bp)
TAGTTGAGCTCGTCTGGTGATATCC
LOC_Os07g26630
Os.8118.1.S1_at--283--3791Chr07:15358443..15358467 (25 bp)
CTCGTCTGGTGATATCCGTGGTCAA
LOC_Os07g26630
Os.8118.1.S1_at--529--10151Chr07:15358455..15358479 (25 bp)
TATCCGTGGTCAAGTCGGCATTGTT
LOC_Os07g26630
Os.8118.1.S1_at--883--1351Chr07:15358522..15358546 (25 bp)
AGAGCACCTGTTCGTCAGTAGTAGA
LOC_Os07g26630
Os.8118.1.S1_at--994--5011Chr07:15358575..15358599 (25 bp)
GCAGTGTGGTGTATGTTTCAGTGTT
LOC_Os07g26630
Os.8118.1.S1_at--1134--651Chr07:15358604..15358628 (25 bp)
ATGCAAGTGTAAACTCTGTCCCTCT
LOC_Os07g26630
Os.8118.1.S1_at--142--2871Chr07:15358608..15358632 (25 bp)
AAGTGTAAACTCTGTCCCTCTGTTG
LOC_Os07g26630
Os.8118.1.S1_at--778--9311Chr07:15358622..15358646 (25 bp)
TCCCTCTGTTGTCTTCATGTTTCTA
LOC_Os07g26630
Target Sequence 
GACTCACATGTTCCCGTGTTGGCTCCGCTGCCAATCGGGTTCGCGGTGTTCATGGTGCACCTGGCGACGATCCCGATCAC
CGGCACCGGCATCAACCCGGCCAGGAGCCTCGGCGTCGCCGTGGTCTACAACAACAACAAGGCCTGGAGTGATCAGTGGA
TCTTCTGGGTTGGGCCGTTCATCGGCGCGGCGATCGCGGCGCTGTACCACCAGGTCATCCTCCGTGCCAGTGCAAGGGGC
TACGGCTCCTTCCGGAGCAACGCGTAGTTGAGCTCGTCTGGTGATATCCGTGGTCAAGTCGGCATTGTTTGGGCTCTTTC
TCCTTCAGAGTTTAAGGTGAATGGAGAGAACAGAGCACCTGTTCGTCAGTAGTAGAAGCAGCTTCAGTTTAAGTGAGAAG
CCCTGCAGTGTGGTGTATGTTTCAGTGTTTGCAATGCAAGTGTAAACTCTGTCCCTCTGTTGTCTTCATGTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis