Browse Element(s) Details


Os.55453.1.S1_at

Description gb:AK108116.1
DB_XREF= gi:32993325
TID=Os.55453.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-C05, full insert sequence.
FL= gb:AK108116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4457011/11MIP family channel proteins containing protein, expressed
LOC_Os07g266601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44530Os.31464.1.S1_a_at11/114+26145064..26149295expressed protein
LOC_Os04g44540Os.25216.1.A1_at11/114+26149776..26152713Mitochondrial carrier protein, expressed
LOC_Os04g44550Os.53502.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44550OsAffx.4086.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44560Os.18634.1.S1_at10/114+26156643..26160715expressed protein
LOC_Os04g44570Os.55453.1.S1_at11/114+26161182..26162454MIP family channel proteins containing protein, expressed
LOC_Os04g44580OsAffx.26461.1.S1_at11/114+26162906..26166902expressed protein
LOC_Os04g44590Os.26349.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44590OsAffx.26462.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44600Os.20306.1.S1_at11/114+26173245..26173981expressed protein
LOC_Os04g44610Os.17440.1.S1_at11/114+26176829..26182579ABC-2 type transporter family protein, expressed
LOC_Os04g44620Os.51865.1.S2_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.2.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.1.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0018987biological_processosmoregulation
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.55453.1.S1_at--353--931Chr04:26161746..26162031 (25 bp)
AGGCATGCGCCCCATGGGCTTCACG
LOC_Os04g44570
Os.55453.1.S1_at--34--8612Chr07:15375633..15375858 (25 bp)
TGACGTTCGGGCTCGTGTACACCGT
LOC_Os07g26660
Os.55453.1.S1_at--594--9411Chr04:26162249..26162273 (25 bp)
TCGTCGGCTGGAACTGGCGCCACCA
LOC_Os04g44570
Os.55453.1.S1_at--282--8071Chr04:26162263..26162287 (25 bp)
TGGCGCCACCACTGGGTTTACTGGC
LOC_Os04g44570
Os.55453.1.S1_at--1046--4551Chr04:26162318..26162342 (25 bp)
GCGCGCTGTACGAGTTTGTCATGGC
LOC_Os04g44570
Os.55453.1.S1_at--207--9951Chr04:26162326..26162350 (25 bp)
TACGAGTTTGTCATGGCGGAGCAGC
LOC_Os04g44570
Os.55453.1.S1_at--160--1611Chr04:26162364..26162388 (25 bp)
AGCTGCAGATACTCGGCTTCCCGTG
LOC_Os04g44570
Os.55453.1.S1_at--221--7551Chr04:26162386..26162410 (25 bp)
GTGGCCGCCGAGGATTACTGATGTA
LOC_Os04g44570
Os.55453.1.S1_at--532--7931Chr04:26162397..26162421 (25 bp)
GGATTACTGATGTATCGAGCTGAAT
LOC_Os04g44570
Os.55453.1.S1_at--1003--5891Chr04:26162413..26162437 (25 bp)
GAGCTGAATCATAGCACCTGCATAT
LOC_Os04g44570
Os.55453.1.S1_at--136--3851Chr04:26162430..26162454 (25 bp)
CTGCATATTTGCTCTAGTGTACCAT
LOC_Os04g44570
Target Sequence
AGGCATGCGCCCCATGGGCTTCACGCTCGGCCACCGCATCCACGAGCGGCACGCCCTGCTGCTCGAGGTCGTCATGACGT
TCGGGCTCGTGTACACCGTGTACGCCACCGCCGTCGACCGGAGAAGCGGCGGCGGCGACACTGCGCCCCTCGCCATCGGC
TTGGTCGCGGGCGCGAACATCCTCGCCGGGGGCCCGTTCGACGGCGCGGCCATGAACCCGGCGCGCGCGTTCGGCCCGGC
GCTCGTCGGCTGGAACTGGCGCCACCACTGGGTTTACTGGCTCGGGCCGCTCATCGGCGCCGGGATGGCCGGCGCGCTGT
ACGAGTTTGTCATGGCGGAGCAGCCTGAGCCGCCGGCAGCTGCAGATACTCGGCTTCCCGTGGCCGCCGAGGATTACTGA
TGTATCGAGCTGAATCATAGCACCTGCATATTTGCTCTAGTGTACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis