Browse Element(s) Details


Os.18634.1.S1_at

Description gb:AK072311.1
DB_XREF= gi:32982334
TID=Os.18634.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020O03, full insert sequence.
FL= gb:AK104019.1 gb:AK072311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4456010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44520OsAffx.14266.1.S1_at11/114+26132105..26133160hypothetical protein
LOC_Os04g44530Os.31464.1.S1_a_at11/114+26145064..26149295expressed protein
LOC_Os04g44540Os.25216.1.A1_at11/114+26149776..26152713Mitochondrial carrier protein, expressed
LOC_Os04g44550Os.53502.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44550OsAffx.4086.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44560Os.18634.1.S1_at10/114+26156643..26160715expressed protein
LOC_Os04g44570Os.55453.1.S1_at11/114+26161182..26162454MIP family channel proteins containing protein, expressed
LOC_Os04g44580OsAffx.26461.1.S1_at11/114+26162906..26166902expressed protein
LOC_Os04g44590Os.26349.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44590OsAffx.26462.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44600Os.20306.1.S1_at11/114+26173245..26173981expressed protein
LOC_Os04g44610Os.17440.1.S1_at11/114+26176829..26182579ABC-2 type transporter family protein, expressed
LOC_Os04g44620Os.51865.1.S2_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.2.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.1.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18634.1.S1_at--1031--1151Chr04:26159472..26159496 (25 bp)
AGTCATGGACTTAGCTGGGTTTACA
LOC_Os04g44560
Os.18634.1.S1_at--551--10711Chr04:26159519..26159543 (25 bp)
TTGCTGTGCAAACGTTGTTCGGAAA
LOC_Os04g44560
Os.18634.1.S1_at--93--7011NONE
GTACTTATCAGAGCTCCCAGAGTTC
NONE
Os.18634.1.S1_at--401--1351Chr04:26160131..26160155 (25 bp)
AGAGTTCTGCTCACGCGATGGCTCA
LOC_Os04g44560
Os.18634.1.S1_at--844--6231Chr04:26160147..26160171 (25 bp)
GATGGCTCACTCGTTGTCAAAGAAA
LOC_Os04g44560
Os.18634.1.S1_at--710--2411Chr04:26160417..26160441 (25 bp)
AAAACATAACTGAGCACCTTGGTGG
LOC_Os04g44560
Os.18634.1.S1_at--40--1751Chr04:26160432..26160456 (25 bp)
ACCTTGGTGGATAGCTGGTGCTGCT
LOC_Os04g44560
Os.18634.1.S1_at--202--7791Chr04:26160448..26160472 (25 bp)
GGTGCTGCTCTGAGTTTTGAGTCAT
LOC_Os04g44560
Os.18634.1.S1_at--200--2511Chr04:26160529..26160553 (25 bp)
AACTTGTGGCAGTATCTCCAACCTT
LOC_Os04g44560
Os.18634.1.S1_at--416--10391Chr04:26160656..26160680 (25 bp)
TTTTGTTTCGACTTACATTCCTTGT
LOC_Os04g44560
Os.18634.1.S1_at--954--2071Chr04:26160670..26160694 (25 bp)
ACATTCCTTGTCTCTTCTGGAGGAA
LOC_Os04g44560
Target Sequence 
AGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAANNTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGT
ACTTATCAGAGCTCCCAGAGTTCTGCTCACGCGATGGCTCACTCGTTGTCAAAGAAATTTTCGGAGTTACAGATGAGGAT
GCAGACAGCATTAGGATTCACATACTTTCTGAAACCAGTGATATTGAGTCATTAGAGAAGATGGTCGATGATTCTGAACT
GGGGCATGGCCCCTCGCCTTTATCATGAAGGGCATTAATGGTAAAACATAACTGAGCACCTTGGTGGATAGCTGGTGCTG
CTCTGAGTTTTGAGTCATCGAAGAAGAGTTCCAGGATACTCAGCTGGAAGTTTTGTAAATCCTATTAGGATTATAACTTG
TGGCAGTATCTCCAACCTTTCTATTATTACTTGAGNTGGCAAAAGTGTTGTTTAAGAGCCTGGTAGTTATGAGTTATACA
AAGCGAGAATGCTGATTGAATTAATTATACATATTTTAAGTTTTTGTTTCGACTTACATTCCTTGTCTCTTCTGGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis