Browse Element(s) Details


Os.25216.1.A1_at

Description gb:AK059144.1
DB_XREF= gi:32969162
TID=Os.25216.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-A10, full insert sequence.
FL= gb:AK059144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4454011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44510Os.7622.1.S1_at11/114+26128239..26129416GRAM domain-containing protein, putative, expressed
LOC_Os04g44520OsAffx.14266.1.S1_at11/114+26132105..26133160hypothetical protein
LOC_Os04g44530Os.31464.1.S1_a_at11/114+26145064..26149295expressed protein
LOC_Os04g44540Os.25216.1.A1_at11/114+26149776..26152713Mitochondrial carrier protein, expressed
LOC_Os04g44550Os.53502.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44550OsAffx.4086.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44560Os.18634.1.S1_at10/114+26156643..26160715expressed protein
LOC_Os04g44570Os.55453.1.S1_at11/114+26161182..26162454MIP family channel proteins containing protein, expressed
LOC_Os04g44580OsAffx.26461.1.S1_at11/114+26162906..26166902expressed protein
LOC_Os04g44590Os.26349.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44590OsAffx.26462.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44600Os.20306.1.S1_at11/114+26173245..26173981expressed protein
LOC_Os04g44610Os.17440.1.S1_at11/114+26176829..26182579ABC-2 type transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25216.1.A1_at--795--10391Chr04:26150586..26150610 (25 bp)
TTTTGCTTCTAGTCTTGCTGCAGGC
LOC_Os04g44540
Os.25216.1.A1_at--316--9111Chr04:26150571..26150595 (25 bp)
TGCTGCAGGCTTCTCAGGAGTTGTA
LOC_Os04g44540
Os.25216.1.A1_at--741--4771Chr04:26150543..26150567 (25 bp)
GCTGCTGCTTCCCATACATTTGATA
LOC_Os04g44540
Os.25216.1.A1_at--517--1151Chr04:26150510..26150534 (25 bp)
AGTCGTTCGGAATGCACTGTTATAC
LOC_Os04g44540
Os.25216.1.A1_at--259--931Chr04:26150271..26150295 (25 bp)
AGGAATATCTCCTGCCGATAGGAAT
LOC_Os04g44540
Os.25216.1.A1_at--857--731Chr04:26150248..26150272 (25 bp)
ATGTTCTGTTCCGTGGTATTGGTCA
LOC_Os04g44540
Os.25216.1.A1_at--243--6851Chr04:26150233..26150257 (25 bp)
GTATTGGTCAACGAATGGCCCGAAG
LOC_Os04g44540
Os.25216.1.A1_at--821--8431Chr04:26150218..26150242 (25 bp)
TGGCCCGAAGTGGATTTGCATCTTT
LOC_Os04g44540
Os.25216.1.A1_at--568--3551Chr04:26150200..26150224 (25 bp)
CATCTTTTCTACTTGTTGGGTCCTA
LOC_Os04g44540
Os.25216.1.A1_at--1057--8812Chr01:21850121..21850210 (24 bp)
TGTTGGGTCCTACTATTTTGTTATA
NONE
Os.25216.1.A1_at--813--6951Chr04:26149852..26149876 (25 bp)
GTAGCAACTACTGAAGATCCTTTTT
LOC_Os04g44540
Target Sequence 
TTTTGCTTCTAGTCTTGCTGCAGGCTTCTCAGGAGTTGTAGCAGCTGCTGCTTCCCATACATTTGATACCGCCAAAAGTC
GTTCGGAATGCACTGTTATACCAAAGTATATCGCGATGGAGAGGAGGCTTCTTAAATGGAAAGTACCAGGAAATTGGATA
GAGAGAAAGACAGGAATATCTCCTGCCGATAGGAATGTTCTGTTCCGTGGTATTGGTCAACGAATGGCCCGAAGTGGATT
TGCATCTTTTCTACTTGTTGGGTCCTACTATTTTGTTATAGATCAGTTCTTGTAGACGACATGAAGAGACATCATTTAAC
TAAGAGATCTCTTTAATGAATTTCAAACATTCTATGTGCATCTGGTGANTAATTGAAGAACAGGTAACCACTTGGGCATC
NNTGNTNNNNNNNNTNNNTTGNNNAGATAACAAGTATCTTGTATGGAAACCGTATTGTTGGTAGGATGACTGATGAGTAG
CAACTACTGAAGATCCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25216.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis