Browse Element(s) Details


Os.31464.1.S1_a_at

Description gb:AK101489.1
DB_XREF= gi:32986698
TID=Os.31464.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042F15, full insert sequence.
FL= gb:AK060860.1 gb:AK064991.1 gb:AK101489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4453011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44500Os.12986.1.S1_at11/114+26123360..26124697GRAM domain containing protein, expressed
LOC_Os04g44510Os.7622.1.S1_at11/114+26128239..26129416GRAM domain-containing protein, putative, expressed
LOC_Os04g44520OsAffx.14266.1.S1_at11/114+26132105..26133160hypothetical protein
LOC_Os04g44530Os.31464.1.S1_a_at11/114+26145064..26149295expressed protein
LOC_Os04g44540Os.25216.1.A1_at11/114+26149776..26152713Mitochondrial carrier protein, expressed
LOC_Os04g44550Os.53502.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44550OsAffx.4086.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44560Os.18634.1.S1_at10/114+26156643..26160715expressed protein
LOC_Os04g44570Os.55453.1.S1_at11/114+26161182..26162454MIP family channel proteins containing protein, expressed
LOC_Os04g44580OsAffx.26461.1.S1_at11/114+26162906..26166902expressed protein
LOC_Os04g44590Os.26349.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44590OsAffx.26462.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44600Os.20306.1.S1_at11/114+26173245..26173981expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31464.1.S1_a_at--84--5931Chr04:26148724..26148748 (25 bp)
GAGCATTGTACAGGCGAATCTTATT
LOC_Os04g44530
Os.31464.1.S1_a_at--48--2971Chr04:26148853..26148877 (25 bp)
AATGGCTTGGTTTTGATCTATACTG
LOC_Os04g44530
Os.31464.1.S1_a_at--401--6371Chr04:26148903..26148927 (25 bp)
GATCCTGCTGCAGCGACTATATCAT
LOC_Os04g44530
Os.31464.1.S1_a_at--588--10171Chr04:26148920..26148944 (25 bp)
TATATCATCTAGACAGTTTCCAGTG
LOC_Os04g44530
Os.31464.1.S1_a_at--287--6851Chr04:26148935..26148959 (25 bp)
GTTTCCAGTGTTCTGAGATACAACT
LOC_Os04g44530
Os.31464.1.S1_a_at--1052--5611Chr04:26148984..26149008 (25 bp)
GACACGCTCGTTTCAAAAGCCTTTG
LOC_Os04g44530
Os.31464.1.S1_a_at--946--7171Chr04:26149008..26149032 (25 bp)
GTCTGATGTTCTACAATCGGTCCAA
LOC_Os04g44530
Os.31464.1.S1_a_at--686--5511Chr04:26149063..26149087 (25 bp)
GAAAACCACGCGAAATGGCGCATAT
LOC_Os04g44530
Os.31464.1.S1_a_at--1093--231Chr04:26149086..26149110 (25 bp)
ATATAGTTTGCCTACTGCCGTGAGC
LOC_Os04g44530
Os.31464.1.S1_a_at--1014--4491Chr04:26149102..26149126 (25 bp)
GCCGTGAGCACATATATGGCTACAA
LOC_Os04g44530
Os.31464.1.S1_a_at--335--8491Chr04:26149118..26149142 (25 bp)
TGGCTACAATTTACAGACTCCAAAT
LOC_Os04g44530
Target Sequence 
GAGCATTGTACAGGCGAATCTTATTCTGACAAAGGAAATGCTTTGCCAAAAAAAAAANAANAAAAAAACTAACCATTTCA
AAAGATTCCNANANNNNNNNNNNANNNATNNNNNNNNNANNNNNNNNNNAATGGCTTGGTTTTGATCTATACTGAGTACT
GTGAAAACTGTCACATTTTGATCCTGCTGCAGCGACTATATCATCTAGACAGTTTCCAGTGTTCTGAGATACAACTACAC
AAGCGAACAAAACGAAACTTGACACGCTCGTTTCAAAAGCCTTTGTCTGATGTTCTACAATCGGTCCAAAAGGCAAGTAT
GCGTGCCAAATAACACAAAGAAAACCACGCGAAATGGCGCATATATAGTTTGCCTACTGCCGTGAGCACATATATGGCTA
CAATTTACAGACTCCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31464.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis