Browse Element(s) Details


Os.53502.1.S1_at

Description gb:AK072980.1
DB_XREF= gi:32983003
TID=Os.53502.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150D11, full insert sequence.
FL= gb:AK072980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4455011/11coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44510Os.7622.1.S1_at11/114+26128239..26129416GRAM domain-containing protein, putative, expressed
LOC_Os04g44520OsAffx.14266.1.S1_at11/114+26132105..26133160hypothetical protein
LOC_Os04g44530Os.31464.1.S1_a_at11/114+26145064..26149295expressed protein
LOC_Os04g44540Os.25216.1.A1_at11/114+26149776..26152713Mitochondrial carrier protein, expressed
LOC_Os04g44550Os.53502.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44550OsAffx.4086.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44560Os.18634.1.S1_at10/114+26156643..26160715expressed protein
LOC_Os04g44570Os.55453.1.S1_at11/114+26161182..26162454MIP family channel proteins containing protein, expressed
LOC_Os04g44580OsAffx.26461.1.S1_at11/114+26162906..26166902expressed protein
LOC_Os04g44590Os.26349.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44590OsAffx.26462.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44600Os.20306.1.S1_at11/114+26173245..26173981expressed protein
LOC_Os04g44610Os.17440.1.S1_at11/114+26176829..26182579ABC-2 type transporter family protein, expressed
LOC_Os04g44620Os.51865.1.S2_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.2.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.1.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53502.1.S1_at--575--8671Chr04:26155816..26155840 (25 bp)
TGTGGTGTTTGGCTGATACACTGAT
LOC_Os04g44550
Os.53502.1.S1_at--990--331Chr04:26155831..26155855 (25 bp)
ATACACTGATACAGGCATTCCTCCA
LOC_Os04g44550
Os.53502.1.S1_at--550--1151Chr04:26155858..26155882 (25 bp)
AGTCGACACACAACATCACCTTGTT
LOC_Os04g44550
Os.53502.1.S1_at--50--2091Chr04:26155870..26155894 (25 bp)
ACATCACCTTGTTTCTTCTACGAGT
LOC_Os04g44550
Os.53502.1.S1_at--493--10311Chr04:26155881..26155905 (25 bp)
TTTCTTCTACGAGTGCTTCCGTATT
LOC_Os04g44550
Os.53502.1.S1_at--399--6111Chr04:26155891..26155915 (25 bp)
GAGTGCTTCCGTATTAGATCAATTG
LOC_Os04g44550
Os.53502.1.S1_at--755--10251Chr04:26155939..26155963 (25 bp)
TTTGAGTCAGCAATGAAGCGTCCAA
LOC_Os04g44550
Os.53502.1.S1_at--370--2671Chr04:26155954..26155978 (25 bp)
AAGCGTCCAAGACACTTCGGCGGAA
LOC_Os04g44550
Os.53502.1.S1_at--365--2951Chr04:26156027..26156051 (25 bp)
AATGGAGAACTGACGAACTTGTAAT
LOC_Os04g44550
Os.53502.1.S1_at--571--2071Chr04:26156043..26156067 (25 bp)
ACTTGTAATATGACGTCAGTTCTAG
LOC_Os04g44550
Os.53502.1.S1_at--996--3431Chr04:26156059..26156083 (25 bp)
CAGTTCTAGACGGATTATACGAGTG
LOC_Os04g44550
Target Sequence 
TGTGGTGTTTGGCTGATACACTGATACAGGCATTCCTCCACCAGTCGACACACAACATCACCTTGTTTCTTCTACGAGTG
CTTCCGTATTAGATCAATTGTTTTTGAGATGGTGGTACATAAATTTGAGTCAGCAATGAAGCGTCCAAGACACTTCGGCG
GAAATAAGTAGTATTTCCACAATTTAATTTACAACAAACACTTACTGTTCAAATGGAGAACTGACGAACTTGTAATATGA
CGTCAGTTCTAGACGGATTATACGAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis