Browse Element(s) Details


Os.17440.1.S1_at

Description gb:AK064945.1
DB_XREF= gi:32974963
TID=Os.17440.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.17440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000P15, full insert sequence.
FL= gb:AK070486.1 gb:AK058387.1 gb:AK064945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4461011/11ABC-2 type transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44540Os.25216.1.A1_at11/114+26149776..26152713Mitochondrial carrier protein, expressed
LOC_Os04g44550Os.53502.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44550OsAffx.4086.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44560Os.18634.1.S1_at10/114+26156643..26160715expressed protein
LOC_Os04g44570Os.55453.1.S1_at11/114+26161182..26162454MIP family channel proteins containing protein, expressed
LOC_Os04g44580OsAffx.26461.1.S1_at11/114+26162906..26166902expressed protein
LOC_Os04g44590Os.26349.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44590OsAffx.26462.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44600Os.20306.1.S1_at11/114+26173245..26173981expressed protein
LOC_Os04g44610Os.17440.1.S1_at11/114+26176829..26182579ABC-2 type transporter family protein, expressed
LOC_Os04g44620Os.51865.1.S2_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.2.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.1.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44630OsAffx.26147.4.S1_s_at11/114+26188695..26193292transposon protein, putative, unclassified
LOC_Os04g44630OsAffx.26147.2.S1_x_at9/114+26188695..26193292transposon protein, putative, unclassified
LOC_Os04g44640OsAffx.28220.1.S1_s_at10/114+26193723..26204743Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os04g44640Os.44572.1.S1_x_at7/114+26193723..26204743Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17440.1.S1_at--829--10311Chr04:26181668..26181692 (25 bp)
TTTAGACTTCCTTACGACATTCCGA
LOC_Os04g44610
Os.17440.1.S1_at--375--10471Chr04:26181679..26181703 (25 bp)
TTACGACATTCCGAAGCCTGTTTGG
LOC_Os04g44610
Os.17440.1.S1_at--533--1671Chr04:26181693..26181717 (25 bp)
AGCCTGTTTGGAGATACCCCATGCA
LOC_Os04g44610
Os.17440.1.S1_at--731--3511Chr04:26181712..26181736 (25 bp)
CATGCAGTACATCAGCTTCCATTAC
LOC_Os04g44610
Os.17440.1.S1_at--569--1551Chr04:26181725..26181749 (25 bp)
AGCTTCCATTACTGGGCGCTGCAGG
LOC_Os04g44610
Os.17440.1.S1_at--315--7771Chr04:26181862..26181886 (25 bp)
GGTCTCGTATTTGACAACCAGTACC
LOC_Os04g44610
Os.17440.1.S1_at--531--6371Chr04:26181900..26181924 (25 bp)
GATCCCTGGAGACTTCATTCTGAAG
LOC_Os04g44610
Os.17440.1.S1_at--239--231Chr04:26181928..26181952 (25 bp)
ATATTCCAGATCAACGTGCACCGGT
LOC_Os04g44610
Os.17440.1.S1_at--69--2931Chr04:26182087..26182111 (25 bp)
AAGGAACCTCTTGGCAAGACACCCT
LOC_Os04g44610
Os.17440.1.S1_at--1021--9631Chr04:26182115..26182139 (25 bp)
TCAGAGGCTACGTTGTGGATCCAGA
LOC_Os04g44610
Os.17440.1.S1_at--897--1251Chr04:26182178..26182202 (25 bp)
AGATATAGGCCCATTTCTTGCCGGT
LOC_Os04g44610
Target Sequence 
TTTAGACTTCCTTACGACATTCCGAAGCCTGTTTGGAGATACCCCATGCAGTACATCAGCTTCCATTACTGGGCGCTGCA
GGGGCAATGCCAGAATGACATGGATGGTCTCGTATTTGACAACCAGTACCCAGACCAACCGAAGATCCCTGGAGACTTCA
TTCTGAAGTACATATTCCAGATCAACGTGCACCGGTCAAAGTGGATTGATCTCTCAGTAATTTTCAGCATGATCTTCATC
TACCGCATTCTGTTCTTCCTCATGATCAAGGTAAATGAGGATGCACTGCCATGGATTCGGGGGTACATTGCAAGGAAAAG
GCTTCAAAAGAAGGAACCTCTTGGCAAGACACCCTCCCTCAGAGGCTACGTTGTGGATCCAGAGCTTGGTCCTAACGAAA
GCTAGAATATAAACTGTTAGCAGATATAGGCCCATTTCTTGCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis