Browse Element(s) Details


Os.16735.1.S1_at

Description gb:AK101802.1
DB_XREF= gi:32987011
TID=Os.16735.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033066J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066J07, full insert sequence.
FL= gb:AK101802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5159011/112,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative, expressed
LOC_Os06g119601/112,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51550OsAffx.24826.1.S1_at11/112+31570121..31571386expressed protein
LOC_Os02g51560OsAffx.12595.1.S1_at11/112+31573715..31574042hypothetical protein
LOC_Os02g51570Os.11397.1.S1_at11/112+31585352..31587279peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g51580OsAffx.5335.3.S1_x_at11/112+31588693..31589257hypothetical protein
LOC_Os02g51590Os.16735.1.S1_at11/112+31591762..315947662,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative, expressed
LOC_Os02g51600Os.53144.1.S1_at11/112+31595497..31598522Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g51610Os.6076.1.S1_at11/112+31598643..31602284CRAL/TRIO, N-terminus family protein, expressed
LOC_Os02g51620Os.38849.1.S1_at11/112+31603932..31608300Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os02g51640Os.53423.1.S1_at10/112+31616907..31621702expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16735.1.S1_at--1051--4171Chr02:31593609..31593633 (25 bp)
CCCATGGCAATTCACTTCGTTCAAT
LOC_Os02g51590
Os.16735.1.S1_at--676--891Chr02:31593832..31593856 (25 bp)
AGGCCCTTCTGAGGCAGGTGTCTAT
LOC_Os02g51590
Os.16735.1.S1_at--992--7131Chr02:31593851..31594264 (25 bp)
GTCTATGCCTACACCAGGAGCTTGG
LOC_Os02g51590
Os.16735.1.S1_at--946--8072Chr02:31594257..31594280 (24 bp)
GGAGCTTGGCTCAGTACAGACAGAA
LOC_Os02g51590
Os.16735.1.S1_at--335--10331Chr02:31594294..31594408 (25 bp)
TTTCAGTAACCATCTGCTCTGTTTC
LOC_Os02g51590
Os.16735.1.S1_at--312--9471Chr02:31594401..31594425 (25 bp)
TCTGTTTCCACCAGCATCTGAGGAA
LOC_Os02g51590
Os.16735.1.S1_at--2--8851Chr02:31594419..31594443 (25 bp)
TGAGGAATTTTCATCCGTCGAACAT
LOC_Os02g51590
Os.16735.1.S1_at--469--9271Chr02:31594432..31594456 (25 bp)
TCCGTCGAACATACAGTTTATCCCC
LOC_Os02g51590
Os.16735.1.S1_at--434--3451Chr02:31594492..31594516 (25 bp)
CAGTATGGGCTGCAGTTTGTAGCAT
LOC_Os02g51590
Os.16735.1.S1_at--662--8791Chr02:31594636..31594660 (25 bp)
TGTTCTCGTTTTGTGGCTCACCATT
LOC_Os02g51590
Os.16735.1.S1_at--906--7531Chr02:31594648..31594672 (25 bp)
GTGGCTCACCATTCATAAGATGTTG
LOC_Os02g51590
Target Sequence 
CCCATGGCAATTCACTTCGTTCAATTATAATGCACTTAGACAAGTTGACTTCTCAAGAGNNTATCANCNTTGAACTGTCT
ACTGGCATTCNTATGCTGTATATATTTAAGGAAGGAAAATTTATTAGACGGGGGAGTCCGGCAGGCCCTTCTGAGGCAGG
TGTCTATGCCTACACCAGGAGCTTGGCTCAGTACAGACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTC
CACCAGCATCTGAGGAATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCATACT
ATTCAGTATGGGCTGCAGTTTGTAGCATCCTTCTTTTTNCGTTTCGTTTGANAACCATGCAGCATGTAACATGGATATCT
AGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGANACNAACGGGGATGAATTTACATCACCATTNTGTTCTCGTTT
TGTGGCTCACCATTCATAAGATGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis