Browse Element(s) Details


Os.38849.1.S1_at

Description gb:AK119887.1
DB_XREF= gi:37989510
TID=Os.38849.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.38849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-179-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-179-H05, full insert sequence.
FL= gb:AK119887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5162011/11Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51570Os.11397.1.S1_at11/112+31585352..31587279peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g51580OsAffx.5335.3.S1_x_at11/112+31588693..31589257hypothetical protein
LOC_Os02g51590Os.16735.1.S1_at11/112+31591762..315947662,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative, expressed
LOC_Os02g51600Os.53144.1.S1_at11/112+31595497..31598522Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g51610Os.6076.1.S1_at11/112+31598643..31602284CRAL/TRIO, N-terminus family protein, expressed
LOC_Os02g51620Os.38849.1.S1_at11/112+31603932..31608300Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os02g51640Os.53423.1.S1_at10/112+31616907..31621702expressed protein
LOC_Os02g51650OsAffx.4416.1.S1_at8/112+31627084..31629073hypothetical protein
LOC_Os02g51650OsAffx.30340.1.S1_x_at1/112+31627084..31629073hypothetical protein
LOC_Os02g51660OsAffx.12597.1.S1_at11/112+31630623..31632389PHP domain C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38849.1.S1_at--304--9951Chr02:31604484..31604508 (25 bp)
TATGACGTCGAAGAGATTGGCCCCG
LOC_Os02g51620
Os.38849.1.S1_at--1028--11Chr02:31604469..31604493 (25 bp)
ATTGGCCCCGAGACGTGTGACAAGC
LOC_Os02g51620
Os.38849.1.S1_at--1077--4031Chr02:31604294..31604318 (25 bp)
CGATGCAGACTGTCCATGTGGAGTT
LOC_Os02g51620
Os.38849.1.S1_at--184--1051Chr02:31604267..31604291 (25 bp)
AGGTGAGCCCATGCAAGCACTTCAG
LOC_Os02g51620
Os.38849.1.S1_at--317--6071Chr02:31604175..31604199 (25 bp)
GAGTTCGAGATGAGCTTCACGCCTT
LOC_Os02g51620
Os.38849.1.S1_at--1126--1811Chr02:31604157..31604181 (25 bp)
ACGCCTTGATCGAGCTGGGTCCAGT
LOC_Os02g51620
Os.38849.1.S1_at--984--7891Chr02:31604120..31604144 (25 bp)
GGTTGGGTACTGATCGAGCTATTCC
LOC_Os02g51620
Os.38849.1.S1_at--811--2651Chr02:31604095..31604119 (25 bp)
AAGCCAGCGCATGGTTGCATTTCAT
LOC_Os02g51620
Os.38849.1.S1_at--976--10711Chr02:31604066..31604090 (25 bp)
TTGCTTGGGAAATCTGCTGCTTCGT
LOC_Os02g51620
Os.38849.1.S1_at--925--6671Chr02:31604021..31604045 (25 bp)
GTTGCTCAGCAAGTGTAACCATCTA
LOC_Os02g51620
Os.38849.1.S1_at--1150--7051Chr02:31604007..31604031 (25 bp)
GTAACCATCTATCTTCTTTTCTCAA
LOC_Os02g51620
Target Sequence 
TATGACGTCGAAGAGATTGGCCCCGAGACGTGTGACAAGCTCAAGTTCCCGGCGCTCGTCAGGGTGCAGAACCATGGCCC
CATGGACGGCAGGCACCCCGTGCTGCTCTTCCTGCGCTGGCCGAACGGCGCGGCGGACGGCGGCAGGCCGGCGAGCCAGC
TGATCGGCTTCCAGAGCCTGCACCTCAAGTCGATGCAGACTGTCCATGTGGAGTTCGAGGTGAGCCCATGCAAGCACTTC
AGCAGAGCGACGGAGGACGGCAAGAAGGTGATTGATCATGGGTCGCATTTCATGATGGTTGGCGATGATGAGTTCGAGAT
GAGCTTCACGCCTTGATCGAGCTGGGTCCAGTTCATTGAGTTGGGGTTGGGTACTGATCGAGCTATTCCAAGCCAGCGCA
TGGTTGCATTTCATTTGCTTGCTTGGGAAATCTGCTGCTTCGTTCAGGGGGCTGAGGATTTAAGTTGCTCAGCAAGTGTA
ACCATCTATCTTCTTTTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis