Browse Element(s) Details


Os.6076.1.S1_at

Description gb:AK066184.1
DB_XREF= gi:32976202
TID=Os.6076.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013056M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056M21, full insert sequence.
FL= gb:AK062267.1 gb:AK066184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5161011/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51560OsAffx.12595.1.S1_at11/112+31573715..31574042hypothetical protein
LOC_Os02g51570Os.11397.1.S1_at11/112+31585352..31587279peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g51580OsAffx.5335.3.S1_x_at11/112+31588693..31589257hypothetical protein
LOC_Os02g51590Os.16735.1.S1_at11/112+31591762..315947662,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative, expressed
LOC_Os02g51600Os.53144.1.S1_at11/112+31595497..31598522Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g51610Os.6076.1.S1_at11/112+31598643..31602284CRAL/TRIO, N-terminus family protein, expressed
LOC_Os02g51620Os.38849.1.S1_at11/112+31603932..31608300Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os02g51640Os.53423.1.S1_at10/112+31616907..31621702expressed protein
LOC_Os02g51650OsAffx.4416.1.S1_at8/112+31627084..31629073hypothetical protein
LOC_Os02g51650OsAffx.30340.1.S1_x_at1/112+31627084..31629073hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6076.1.S1_at--793--7611Chr02:31599112..31599136 (25 bp)
GGGAAAGCCGCAGTGACTTCATCAA
LOC_Os02g51610
Os.6076.1.S1_at--808--5891Chr02:31599079..31599103 (25 bp)
GAGCTGACAAGCTTGCCAGGCGAAG
LOC_Os02g51610
Os.6076.1.S1_at--742--10151Chr02:31599047..31599071 (25 bp)
TATAACCCCGGCAGATTGAAGTGTC
LOC_Os02g51610
Os.6076.1.S1_at--459--2871Chr02:31599029..31599053 (25 bp)
AAGTGTCTGTTCATCGTCTGATCCA
LOC_Os02g51610
Os.6076.1.S1_at--495--9011Chr02:31598951..31598975 (25 bp)
TGAATTCTCAGCTCTCACCAAGAGA
LOC_Os02g51610
Os.6076.1.S1_at--1129--5271Chr02:31598884..31598908 (25 bp)
GAATGTGTTGCCTGACTTGTTTTGT
LOC_Os02g51610
Os.6076.1.S1_at--163--3611Chr02:31598869..31598893 (25 bp)
CTTGTTTTGTAGTCGGCACCACCAT
LOC_Os02g51610
Os.6076.1.S1_at--1128--7371Chr02:31598834..31598858 (25 bp)
GTGACCTCATTTGAGAACCCTTTCG
LOC_Os02g51610
Os.6076.1.S1_at--85--1511Chr02:31598781..31598805 (25 bp)
AGCACGACACTTTGTTGCACTCAGT
LOC_Os02g51610
Os.6076.1.S1_at--1027--6811Chr02:31598732..31598756 (25 bp)
GTTTATTCACTTACTGCCTGCTATA
LOC_Os02g51610
Os.6076.1.S1_at--767--4471Chr02:31598717..31598741 (25 bp)
GCCTGCTATATCTTGCAATCCTTTT
LOC_Os02g51610
Target Sequence 
GGGAAAGCCGCAGTGACTTCATCAAACGGAGTTGAGCTGACAAGCTTGCCAGGCGAAGGTAAAGGTATAACCCCGGCAGA
TTGAAGTGTCTGTTCATCGTCTGATCCATGAATACCNCCATGAAAAATGCAAGCCAACTGTTGATATGAACTCCAACACA
GTGAATTCTCAGCTCTCACCAAGAGATGAACACCAAATGTTAACTAGAAACGCTTTAACACACAGCAGGAATGTGTTGCC
TGACTTGTTTTGTAGTCGGCACCACCATCCCAACCTTCGTGACCTCATTTGAGAACCCTTTCGCAACAATATCTGCCAGA
TGATAAATAACAGCACGACACTTTGTTGCACTCAGTTTCCTCCTGTCATTTCTCTCGAGGGTTTATTCACTTACTGCCTG
CTATATCTTGCAATCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis