Browse Element(s) Details


OsAffx.12597.1.S1_at

Description tigr:9630.m05079
TID=OsAffx.12597.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY098965 At2g13860F13J11.19
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5166011/11PHP domain C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51620Os.38849.1.S1_at11/112+31603932..31608300Glycosyl hydrolase family 3 C terminal domain containing protein, expressed
LOC_Os02g51640Os.53423.1.S1_at10/112+31616907..31621702expressed protein
LOC_Os02g51650OsAffx.4416.1.S1_at8/112+31627084..31629073hypothetical protein
LOC_Os02g51650OsAffx.30340.1.S1_x_at1/112+31627084..31629073hypothetical protein
LOC_Os02g51660OsAffx.12597.1.S1_at11/112+31630623..31632389PHP domain C-terminal region family protein, expressed
LOC_Os02g51670Os.28117.1.S1_at11/112+31642600..31644576AP2 domain containing protein, expressed
LOC_Os02g51680Os.50393.1.S1_at11/112+31657211..31659949trehalose-phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0003677molecular_functionDNA binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12597.1.S1_at--680--7011Chr02:31631632..31631656 (25 bp)
GTACTTGTATGACGGTGGACCTGCT
LOC_Os02g51660
OsAffx.12597.1.S1_at--877--8531Chr02:31631647..31631789 (25 bp)
TGGACCTGCTTATGCCACTGGCAAT
LOC_Os02g51660
OsAffx.12597.1.S1_at--122--7491Chr02:31631836..31631860 (25 bp)
GTGTGGCAGTTTTAGCTCATCCATG
LOC_Os02g51660
OsAffx.12597.1.S1_at--1009--7591Chr02:31631860..31631884 (25 bp)
GGGCACTGAAAAATCCTGTGGCTGT
LOC_Os02g51660
OsAffx.12597.1.S1_at--142--7951Chr02:31631891..31631915 (25 bp)
GGATTTGAAGGCTGCTGGCTTGCAT
LOC_Os02g51660
OsAffx.12597.1.S1_at--389--6411Chr02:31632054..31632078 (25 bp)
GATCTGGCAGATACATATGGTCTTC
LOC_Os02g51660
OsAffx.12597.1.S1_at--1023--4251Chr02:31632150..31632174 (25 bp)
CCGGTCTTGGCTGTTTCTGGATTTC
LOC_Os02g51660
OsAffx.12597.1.S1_at--37--10791Chr02:31632175..31632199 (25 bp)
TTGATGCAGCTCAACCAATCTGGCA
LOC_Os02g51660
OsAffx.12597.1.S1_at--1045--3831Chr02:31632232..31632256 (25 bp)
CTGAAAGGGCACCTAATGGCTCAAA
LOC_Os02g51660
OsAffx.12597.1.S1_at--944--751Chr02:31632290..31632314 (25 bp)
ATGTAACTTGCGTCTTCTTTCTTCA
LOC_Os02g51660
OsAffx.12597.1.S1_at--535--9571Chr02:31632302..31632326 (25 bp)
TCTTCTTTCTTCAGACCTGGAGGTA
LOC_Os02g51660
Target Sequence 
GTACTTGTATGACGGTGGACCTGCTTATGCCACTGGCAATGAACCAGCAGGGGAGTCTGTGGTGCAATTAGTTTGTAGAA
ATGGGGGTGTGGCAGTTTTAGCTCATCCATGGGCACTGAAAAATCCTGTGGCTGTGATAAAGGATTTGAAGGCTGCTGGC
TTGCATGGCATTGAGGTTTACAGAAGCGATGGCAAGCTATCAGGATTAAGTGATCTGGCAGATACATATGGTCTTCTGAA
GATTGGTGGTTCAGACTACCATGGACGAGACGACAAGGATGAACCTGACGTAGGAAGTGTTGATCTTCCGGTCTTGGCTG
TTTCTGGATTTCTTGATGCAGCTCAACCAATCTGGCACAATGCTACCAAGGAAATTCTGGCAAATATTACTGAAAGGGCA
CCTAATGGCTCAAAGGGACTCCAAAGGACTAACTCTGCAAAAGATTTATGTAACTTGCGTCTTCTTTCTTCAGACCTGGA
GGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis