Browse Element(s) Details


Os.50393.1.S1_at

Description gb:AK121015.1
DB_XREF= gi:37990638
TID=Os.50393.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50393 (NCBI UniGene Cluster)
UG_TITLE=Hypothetical protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048F14, full insert sequence.
FL= gb:AK121015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5168011/11trehalose-phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51660OsAffx.12597.1.S1_at11/112+31630623..31632389PHP domain C-terminal region family protein, expressed
LOC_Os02g51670Os.28117.1.S1_at11/112+31642600..31644576AP2 domain containing protein, expressed
LOC_Os02g51680Os.50393.1.S1_at11/112+31657211..31659949trehalose-phosphatase family protein, expressed
LOC_Os02g51689NANA2+31662925..31663303NA
LOC_Os02g51700Os.10260.1.S1_at11/112+31667275..31669420expressed protein
LOC_Os02g51710Os.8165.1.S1_at11/112+31670605..31671686wound/stress protein, putative, expressed
LOC_Os02g51720OsAffx.12598.1.S1_at11/112+31677677..31678615hypothetical protein
LOC_Os02g51730Os.18041.1.S1_at11/112+31680311..31684415TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50393.1.S1_at--388--1011Chr02:31658958..31658982 (25 bp)
AGGTTTTGGAGATCAGGCCGAGCAT
LOC_Os02g51680
Os.50393.1.S1_at--296--4811Chr02:31659002..31659026 (25 bp)
GCTCTGGAGTTCTTGCTTGAATCGC
LOC_Os02g51680
Os.50393.1.S1_at--357--3051Chr02:31659021..31659245 (25 bp)
AATCGCTGGGATTCGCCAACTGCGG
LOC_Os02g51680
Os.50393.1.S1_at--258--1871Chr02:31659284..31659471 (25 bp)
ACGAGGACGCCTTCAAGGTGTTGAG
LOC_Os02g51680
Os.50393.1.S1_at--5--291Chr02:31659483..31659507 (25 bp)
AGGGCCTGGGAATCCTAGTCTCCAA
LOC_Os02g51680
Os.50393.1.S1_at--743--9491Chr02:31659538..31659558 (21 bp)
TCTCCAGGACCCAACAGAGGTGATG
LOC_Os02g51680
Os.50393.1.S1_at--629--9411Chr02:31659718..31659742 (25 bp)
TCGTCGTTGATGATTCGTCCGAGAG
LOC_Os02g51680
Os.50393.1.S1_at--422--9411Chr02:31659732..31659756 (25 bp)
TCGTCCGAGAGTGTAGCGGCGACAC
LOC_Os02g51680
Os.50393.1.S1_at--714--9291Chr02:31659850..31659874 (25 bp)
TCCGATGATTTCTGTGGTTGGCCTC
LOC_Os02g51680
Os.50393.1.S1_at--73--9091Chr02:31659875..31659899 (25 bp)
TGCGACGGACTCGTGGTGGTTACAC
LOC_Os02g51680
Os.50393.1.S1_at--94--8591Chr02:31659891..31659915 (25 bp)
TGGTTACACGCTAGCTGTTCGATTC
LOC_Os02g51680
Target Sequence 
AGGTTTTGGAGATCAGGCCGAGCATTNAGTNGGACAAGGGCAAGGCTCTGGAGTTCTTGCTTGAATCGCTGGGATTCGCC
AACTGCGGCGACGNTCNTGCCGGTGTACATCGGTGACGACCGCACCGACGAGGACGCCTTCAAGGTGTTGAGAAAGAGAG
GTCAGGGCCTGGGAATCCTAGTCTCCAAGTGCCCCAAGGACACCAACGCCTCCTACTCTCTCCAGGACCCAACAGAGGTG
ATGGAGTTCTTGCTCAGGCTGGTGGAGTGGAAGCGGAAGTCGTCGTCGTCGTCGTTGATGATTCGTCCGAGAGTGTAGCG
GCGACACGGTGTAGAGGCCGTAAGAAACTGAAACTAAGATGGTCAATCATGCGAACATGCGAACATACCCCACCAACACC
ACGTACTACCCCCATTTTTTTCCGATGATTTCTGTGGTTGGCCTCTGCGACGGACTCGTGGTGGTTACACGCTAGCTGTT
CGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis