Browse Element(s) Details


Os.10260.1.S1_at

Description gb:AK067176.1
DB_XREF= gi:32977194
TID=Os.10260.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10260 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097D23, full insert sequence.
FL= gb:AK067176.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5170011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51670Os.28117.1.S1_at11/112+31642600..31644576AP2 domain containing protein, expressed
LOC_Os02g51680Os.50393.1.S1_at11/112+31657211..31659949trehalose-phosphatase family protein, expressed
LOC_Os02g51689NANA2+31662925..31663303NA
LOC_Os02g51700Os.10260.1.S1_at11/112+31667275..31669420expressed protein
LOC_Os02g51710Os.8165.1.S1_at11/112+31670605..31671686wound/stress protein, putative, expressed
LOC_Os02g51720OsAffx.12598.1.S1_at11/112+31677677..31678615hypothetical protein
LOC_Os02g51730Os.18041.1.S1_at11/112+31680311..31684415TPR Domain containing protein, expressed
LOC_Os02g51740Os.51369.1.S1_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51740OsAffx.12599.1.S1_s_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51750Os.11915.1.S1_at11/112+31692292..31694577Annexin-like protein RJ4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10260.1.S1_at--838--7471Chr02:31668752..31668776 (25 bp)
GTGGAACAAATGGTGCCAACCCTCC
LOC_Os02g51700
Os.10260.1.S1_at--921--271Chr02:31668802..31668826 (25 bp)
ATAGGTGCGGCAAATCCTGGTCCAG
LOC_Os02g51700
Os.10260.1.S1_at--6--5291Chr02:31668962..31668986 (25 bp)
GAATGTGCCTCCAATGTGGTATACC
LOC_Os02g51700
Os.10260.1.S1_at--917--1371Chr02:31668989..31669013 (25 bp)
AGACCTATTCACACGCACGAGGTAT
LOC_Os02g51700
Os.10260.1.S1_at--16--10111Chr02:31669011..31669035 (25 bp)
TATGGTGTGTCCTGTTTGCAACGAT
LOC_Os02g51700
Os.10260.1.S1_at--612--7611Chr02:31669114..31669138 (25 bp)
GGGCAATCATCACACGCTTCGTGGA
LOC_Os02g51700
Os.10260.1.S1_at--654--8971Chr02:31669143..31669167 (25 bp)
TGAAACTGAGATGGCCCTGCGGCAA
LOC_Os02g51700
Os.10260.1.S1_at--431--8831Chr02:31669177..31669201 (25 bp)
TGATTACTAACTAGTGCCACCTCCT
LOC_Os02g51700
Os.10260.1.S1_at--27--2451Chr02:31669259..31669283 (25 bp)
AAAATCCCGTAGAACTGCCTCCAAG
LOC_Os02g51700
Os.10260.1.S1_at--4--4391Chr02:31669279..31669303 (25 bp)
CCAAGAGTCATAGTCGGTTCCCGAT
LOC_Os02g51700
Os.10260.1.S1_at--1148--811Chr02:31669364..31669388 (25 bp)
ATGGTTCCTTGCAAAATTCCGTCGA
LOC_Os02g51700
Target Sequence 
GTGGAACAAATGGTGCCAACCCTCCAGTTTCTACTGAAGGAAAGAGAATAATAGGTGCGGCAAATCCTGGTCCAGAAGAT
GCTGCTGATCTTCTAAGAATGTGCCTCCAATGTGGTATACCAAAGACCTATTCACACGCACGAGGTATGGTGTGTCCTGT
TTGCAACGATAGACCAGAGCAGGCAAGAGAGCCAGAAAAGAAGAAAGGATCGACCGTCAAAGACAAGGAGAAGATCAAAA
GGATGAGGGGGCAATCATCACACGCTTCGTGGAAGAGTGAAACTGAGATGGCCCTGCGGCAACAATTTGACTGATTACTA
ACTAGTGCCACCTCCTATACTTGGTGTCATGTGTTATGTACACTGCGAATACTTATGTAATCCTATCTTCATCAAAATCC
CGTAGAACTGCCTCCAAGAGTCATAGTCGGTTCCCGATTGTGTTTGCTGTATTTTCAGTTTTCCACCATGAATATGGATT
TGCTCGATAAGCTGAGAAATGGTTCCTTGCAAAATTCCGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis