Browse Element(s) Details


Os.28117.1.S1_at

Description gb:AK105877.1
DB_XREF= gi:32991086
TID=Os.28117.1
CNT=40
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C05, full insert sequence.
FL= gb:AK105877.1 gb:AK105991.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5167011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51640Os.53423.1.S1_at10/112+31616907..31621702expressed protein
LOC_Os02g51650OsAffx.4416.1.S1_at8/112+31627084..31629073hypothetical protein
LOC_Os02g51650OsAffx.30340.1.S1_x_at1/112+31627084..31629073hypothetical protein
LOC_Os02g51660OsAffx.12597.1.S1_at11/112+31630623..31632389PHP domain C-terminal region family protein, expressed
LOC_Os02g51670Os.28117.1.S1_at11/112+31642600..31644576AP2 domain containing protein, expressed
LOC_Os02g51680Os.50393.1.S1_at11/112+31657211..31659949trehalose-phosphatase family protein, expressed
LOC_Os02g51689NANA2+31662925..31663303NA
LOC_Os02g51700Os.10260.1.S1_at11/112+31667275..31669420expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28117.1.S1_at--756--8111Chr02:31644106..31644130 (25 bp)
GGACGAGTCGGAGACATTCCACCTG
LOC_Os02g51670
Os.28117.1.S1_at--46--7611Chr02:31644159..31644183 (25 bp)
GGGACTCAATCCTCTCATAAACAAG
LOC_Os02g51670
Os.28117.1.S1_at--775--7131Chr02:31644225..31644249 (25 bp)
GTCTTCGTCAAGCTAGAGTCACTCA
LOC_Os02g51670
Os.28117.1.S1_at--703--6091Chr02:31644240..31644264 (25 bp)
GAGTCACTCAACTCAACTAGCTGTG
LOC_Os02g51670
Os.28117.1.S1_at--737--2531Chr02:31644254..31644278 (25 bp)
AACTAGCTGTGTAATCTTCTCTGAA
LOC_Os02g51670
Os.28117.1.S1_at--1043--9751Chr02:31644265..31644289 (25 bp)
TAATCTTCTCTGAATTCCGTGGCTT
LOC_Os02g51670
Os.28117.1.S1_at--614--8471Chr02:31644293..31644317 (25 bp)
TGGCTCGGTGGCATTTTAGACGTCG
LOC_Os02g51670
Os.28117.1.S1_at--306--11Chr02:31644378..31644402 (25 bp)
ATTACGTCGTCGTGCAAGTGTCGTT
LOC_Os02g51670
Os.28117.1.S1_at--786--7451Chr02:31644395..31644419 (25 bp)
GTGTCGTTGGTGTACTCAGTGATCT
LOC_Os02g51670
Os.28117.1.S1_at--836--1111Chr02:31644412..31644436 (25 bp)
AGTGATCTGATCTCCTGGTTGAGCT
LOC_Os02g51670
Os.28117.1.S1_at--227--8431Chr02:31644460..31644484 (25 bp)
GGCCGGTCGAGAATTAAGCTGTAAT
LOC_Os02g51670
Target Sequence 
GGACGAGTCGGAGACATTCCACCTGCGCAAGTACCCGTCCTGGGAGATCGACTGGGACTCAATCCTCTCATAAACAAGCA
GAAGCAGCTACTACTAGTCTATTACTAGTACTAGTAGTAGTCTTCGTCAAGCTAGAGTCACTCAACTCAACTAGCTGTGT
AATCTTCTCTGAATTCCGTGGCTTCCATGGCTCGGTGGCATTTTAGACGTCGGCCATGGCTGCTGCGAGTAGCAGTAACT
AGTCAGTACTCAGTAGTANGTAAGGTCGTTGGTATTACGTCGTCGTGCAAGTGTCGTTGGTGTACTCAGTGATCTGATCT
CCTGGTTGAGCTGCCGGTTGTTTTTTTCACGGCGCGGCCGGTCGAGAATTAAGCTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis