Browse Element(s) Details


Os.18041.1.S1_at

Description gb:AK072727.1
DB_XREF= gi:32982750
TID=Os.18041.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140L15, full insert sequence.
FL= gb:AK072727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5173011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51680Os.50393.1.S1_at11/112+31657211..31659949trehalose-phosphatase family protein, expressed
LOC_Os02g51689NANA2+31662925..31663303NA
LOC_Os02g51700Os.10260.1.S1_at11/112+31667275..31669420expressed protein
LOC_Os02g51710Os.8165.1.S1_at11/112+31670605..31671686wound/stress protein, putative, expressed
LOC_Os02g51720OsAffx.12598.1.S1_at11/112+31677677..31678615hypothetical protein
LOC_Os02g51730Os.18041.1.S1_at11/112+31680311..31684415TPR Domain containing protein, expressed
LOC_Os02g51740Os.51369.1.S1_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51740OsAffx.12599.1.S1_s_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51750Os.11915.1.S1_at11/112+31692292..31694577Annexin-like protein RJ4, putative, expressed
LOC_Os02g51760OsAffx.12600.1.S1_at11/112+31698319..31701523expressed protein
LOC_Os02g51770Os.20783.1.S1_a_at11/112+31701789..31705122TLD family protein, expressed
LOC_Os02g51780Os.9483.1.S1_at11/112+31705484..31710525RNB-like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18041.1.S1_at--982--9631Chr02:31681497..31681521 (25 bp)
TCAGGAGGGCCGACTGCAACGTCAA
LOC_Os02g51730
Os.18041.1.S1_at--14--5731Chr02:31681383..31681510 (25 bp)
GACTGCAACGTCAAGCTGGAGAGAT
LOC_Os02g51730
Os.18041.1.S1_at--1148--4931Chr02:31681244..31681268 (25 bp)
GCATTGCAAGCAGATCACAACAGTG
LOC_Os02g51730
Os.18041.1.S1_at--614--10511Chr02:31680649..31680673 (25 bp)
TTCTTTAATCTGTCGGCTACCCGAA
LOC_Os02g51730
Os.18041.1.S1_at--917--7171Chr02:31680638..31680662 (25 bp)
GTCGGCTACCCGAAATCAACTGCAA
LOC_Os02g51730
Os.18041.1.S1_at--230--4331Chr02:31680569..31680593 (25 bp)
CCATTGCGCGGTTTGTTAGTGTCAA
LOC_Os02g51730
Os.18041.1.S1_at--639--9011Chr02:31680523..31680547 (25 bp)
TGCACTATACGCCAAATTACAAGAG
LOC_Os02g51730
Os.18041.1.S1_at--518--8751Chr02:31680480..31680504 (25 bp)
TGTACATAATACTTGCTGCACCGAG
LOC_Os02g51730
Os.18041.1.S1_at--235--3851Chr02:31680465..31680489 (25 bp)
CTGCACCGAGAAGTATAGCTAGTTA
LOC_Os02g51730
Os.18041.1.S1_at--170--5351Chr02:31680397..31680421 (25 bp)
GAAGATTTAAGTTTGCCTCACACAA
LOC_Os02g51730
Os.18041.1.S1_at--230--2051Chr02:31680369..31680393 (25 bp)
ACATACTGGGTTGTACTTTGTACTA
LOC_Os02g51730
Target Sequence 
TCAGGAGGGCCGACTGCAACGTCAAGCTGGAGAGATGGGAAGCGTCGTTNNCGAGATTACCAGGTGCTGATCCNAAGAAC
TCCCGGAGAACGNGGACATGAAGAAGGCGCTGTCCGAGGTCGAAGCCNAAGCTCCGGAGCCAGAGGAATGGGGGCATTGC
AAGCAGATCACAACAGTGACGCCANGCTTCTTTAATCTGTCGGCTACCCGAAATCAACTGCAAGATCTGAAGAGGACAAG
ACTTTGGACAAAACAATGCAGCACGCACCATTGCGCGGTTTGTTAGTGTCAAGTCAGTATGATTCTTTTTTTGTGCACTA
TACGCCAAATTACAAGAGAATTGAGAGTAATGAAACTGTACATAATACTTGCTGCACCGAGAAGTATAGCTAGTTAATTT
GAATGTGGGTTGGCAGTGATAGCAACCATGAAAGTTTCTGAAGATTTAAGTTTGCCTCACACAAAAAACATACTGGGTTG
TACTTTGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis