Browse Element(s) Details


Os.9483.1.S1_at

Description gb:AK072432.1
DB_XREF= gi:32982455
TID=Os.9483.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9483 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023098A15, full insert sequence.
FL= gb:AK072432.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5178011/11RNB-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51730Os.18041.1.S1_at11/112+31680311..31684415TPR Domain containing protein, expressed
LOC_Os02g51740Os.51369.1.S1_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51740OsAffx.12599.1.S1_s_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51750Os.11915.1.S1_at11/112+31692292..31694577Annexin-like protein RJ4, putative, expressed
LOC_Os02g51760OsAffx.12600.1.S1_at11/112+31698319..31701523expressed protein
LOC_Os02g51770Os.20783.1.S1_a_at11/112+31701789..31705122TLD family protein, expressed
LOC_Os02g51780Os.9483.1.S1_at11/112+31705484..31710525RNB-like protein, expressed
LOC_Os02g51790Os.5206.1.S2_at11/112+31713856..3171663050S ribosomal protein L29, chloroplast precursor, putative, expressed
LOC_Os02g51790Os.5206.1.S1_at10/112+31713856..3171663050S ribosomal protein L29, chloroplast precursor, putative, expressed
LOC_Os02g51810Os.52928.1.S1_at11/112+31733624..31741499chloroplast outer membrane translocon subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9483.1.S1_at--306--2251Chr02:31706002..31706026 (25 bp)
AAATTCCTGTGGTTCTTCATGCGAT
LOC_Os02g51780
Os.9483.1.S1_at--398--8891Chr02:31705971..31705995 (25 bp)
TGAGGACTCTGCGTTGGACATTGGA
LOC_Os02g51780
Os.9483.1.S1_at--571--2311Chr02:31705833..31705857 (25 bp)
AAAGTTCCTTTCAGGGTTCAGCAAG
LOC_Os02g51780
Os.9483.1.S1_at--517--1291Chr02:31705788..31705812 (25 bp)
AGATGCTCCATTCCTGTGTAGCTTC
LOC_Os02g51780
Os.9483.1.S1_at--155--6971Chr02:31705771..31705795 (25 bp)
GTAGCTTCTTTCTCCGTTATCATAT
LOC_Os02g51780
Os.9483.1.S1_at--132--10211Chr02:31705749..31705773 (25 bp)
TATTTACCTCCATTTGACATCCAAG
LOC_Os02g51780
Os.9483.1.S1_at--466--571Chr02:31705731..31705755 (25 bp)
ATCCAAGGTTCTCGCGGTCAAGTAG
LOC_Os02g51780
Os.9483.1.S1_at--218--10373Chr11:23099847..23099871 (25 bp)
TTTTTTACTTCAGGCCACTTGACCA
NONE
Os.9483.1.S1_at--32--6291Chr02:31705636..31705660 (25 bp)
GATGTATTCATTAGTTGCTCCTTAG
LOC_Os02g51780
Os.9483.1.S1_at--859--7753Chr11:23099978..23100002 (25 bp)
GGTGAACTCTTACACATGTTTGTCA
NONE
Os.9483.1.S1_at--256--751Chr02:31705553..31705577 (25 bp)
ATGTTTGTCATCTTGCTTTGTTACT
LOC_Os02g51780
Target Sequence 
AAATTCCTGTGGTTCTTCATGCGATTGGTGGTGAGGACTCTGCGTTGGACATTGGAGTAAGACTATACATGTCATCATAT
TTCAAGTGATAGGAAATAAGCATTAAGACAGAAATCTATTTTCTTTGGTGAACAACAGTAATAAAAAAATGACAGAAGAG
TAGCATTTAAAAGTTCCTTTCAGGGTTCAGCAAGCAAATATCAACTAGTGTTGCAGATGCTCCATTCCTGTGTAGCTTCT
TTCTCCGTTATCATATTTACCTCCATTTGACATCCAAGGTTCTCGCGGTCAAGTAGCCTTCCTTTTTTACTTCAGGCCAC
TTGACCAAGTCCCAGATTCAGCTTTGACAGAAGACTCTGTATCGGTGATGTATTCATTAGTTGCTCCTTAGANGCTTTTG
TTCTTGTGTTGANCCNCCTGCAGTTTTTTATACTGGTGAACTCTTACACATGTTTGTCATCTTGCTTTGTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis