Browse Element(s) Details


OsAffx.12600.1.S1_at

Description tigr:9630.m05091
TID=OsAffx.12600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5176011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51720OsAffx.12598.1.S1_at11/112+31677677..31678615hypothetical protein
LOC_Os02g51730Os.18041.1.S1_at11/112+31680311..31684415TPR Domain containing protein, expressed
LOC_Os02g51740Os.51369.1.S1_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51740OsAffx.12599.1.S1_s_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51750Os.11915.1.S1_at11/112+31692292..31694577Annexin-like protein RJ4, putative, expressed
LOC_Os02g51760OsAffx.12600.1.S1_at11/112+31698319..31701523expressed protein
LOC_Os02g51770Os.20783.1.S1_a_at11/112+31701789..31705122TLD family protein, expressed
LOC_Os02g51780Os.9483.1.S1_at11/112+31705484..31710525RNB-like protein, expressed
LOC_Os02g51790Os.5206.1.S2_at11/112+31713856..3171663050S ribosomal protein L29, chloroplast precursor, putative, expressed
LOC_Os02g51790Os.5206.1.S1_at10/112+31713856..3171663050S ribosomal protein L29, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12600.1.S1_at--953--4971Chr02:31700660..31700850 (25 bp)
GCATGAATCAGTTGGACGTGGCATC
LOC_Os02g51760
OsAffx.12600.1.S1_at--606--6351Chr02:31700867..31700891 (25 bp)
GATGCCTTGTATCGATTGGCCAATT
LOC_Os02g51760
OsAffx.12600.1.S1_at--884--271Chr02:31700901..31700925 (25 bp)
ATAGGCATCGCATTGCTAGTACAAC
LOC_Os02g51760
OsAffx.12600.1.S1_at--784--3391Chr02:31700925..31700949 (25 bp)
CAGAGACCGTTAACCAACTTGGAGT
LOC_Os02g51760
OsAffx.12600.1.S1_at--902--6311Chr02:31701096..31701120 (25 bp)
GATGAACCCTATGGATCGCTCAGTG
LOC_Os02g51760
OsAffx.12600.1.S1_at--841--331Chr02:31701152..31701176 (25 bp)
ATAAATCTCCACCTGATTCGGCGCT
LOC_Os02g51760
OsAffx.12600.1.S1_at--210--4811Chr02:31701174..31701198 (25 bp)
GCTCGGCATTGGTCCCTGAATTGTA
LOC_Os02g51760
OsAffx.12600.1.S1_at--833--9311Chr02:31701186..31701210 (25 bp)
TCCCTGAATTGTACTGCACCGTGAA
LOC_Os02g51760
OsAffx.12600.1.S1_at--187--10351Chr02:31701249..31701273 (25 bp)
TTTACTGCACATGTCTGATCGATTG
LOC_Os02g51760
OsAffx.12600.1.S1_at--1138--8891Chr02:31701272..31701296 (25 bp)
TGAGCATTCTAGGTCCGGCAATTTT
LOC_Os02g51760
OsAffx.12600.1.S1_at--218--3791Chr02:31701305..31701329 (25 bp)
CTCGGTTCCGGTACGCATGTATATA
LOC_Os02g51760
Target Sequence 
GCATGAATCAGTTGGACGTGGCATCCAAAGCTCGCATAAGAGATGCCTTGTATCGATTGGCCAATTGTGTTGAGCATAGG
CATCGCATTGCTAGTACAACAGAGACCGTTAACCAACTTGGAGTTATGGAATCATCAGCTTCAAAGAGGTGGAGAGAAAT
TCAGATGATGAACCCTATGGATCGCTCAGTGGCACAGCTGCTTCTCCAGAAACCGCTCCACCATAAATCTCCACCTGATT
CGGCGCTCGGCATTGGTCCCTGAATTGTACTGCACCGTGAAAAACACGTAGGAGTGGCTGCTGATGCGATGTGGTTTTTT
TTACTGCACATGTCTGATCGATTGAGCATTCTAGGTCCGGCAATTTTTTTTCCCTCTCGGTTCCGGTACGCATGTATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis