Browse Element(s) Details


Os.5206.1.S1_at

Description gb:AK068621.1
DB_XREF= gi:32978638
TID=Os.5206.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153I07, full insert sequence.
FL= gb:AK059012.1 gb:AK068621.1 gb:AK099805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5179010/1150S ribosomal protein L29, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51740Os.51369.1.S1_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51740OsAffx.12599.1.S1_s_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51750Os.11915.1.S1_at11/112+31692292..31694577Annexin-like protein RJ4, putative, expressed
LOC_Os02g51760OsAffx.12600.1.S1_at11/112+31698319..31701523expressed protein
LOC_Os02g51770Os.20783.1.S1_a_at11/112+31701789..31705122TLD family protein, expressed
LOC_Os02g51780Os.9483.1.S1_at11/112+31705484..31710525RNB-like protein, expressed
LOC_Os02g51790Os.5206.1.S2_at11/112+31713856..3171663050S ribosomal protein L29, chloroplast precursor, putative, expressed
LOC_Os02g51790Os.5206.1.S1_at10/112+31713856..3171663050S ribosomal protein L29, chloroplast precursor, putative, expressed
LOC_Os02g51810Os.52928.1.S1_at11/112+31733624..31741499chloroplast outer membrane translocon subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5206.1.S1_at--388--1251Chr02:31714110..31714134 (25 bp)
AGATTCGGGCCATGCCGACGGAGAA
LOC_Os02g51790
Os.5206.1.S1_at--1154--4551Chr02:31714196..31714220 (25 bp)
GCGCGCCAGGAGTTCAAATCCAGCG
LOC_Os02g51790
Os.5206.1.S1_at--833--2271Chr02:31714211..31714235 (25 bp)
AAATCCAGCGAGTTCGGCCGCATGC
LOC_Os02g51790
Os.5206.1.S1_at--34--4991NONE
GCATGCGCAAGAGGATTGCTCGTAT
NONE
Os.5206.1.S1_at--368--6591Chr02:31715184..31715208 (25 bp)
GATTGCTCGTATGCTGACTGTCAAA
LOC_Os02g51790
Os.5206.1.S1_at--744--2711Chr02:31715277..31715301 (25 bp)
AAGCATCGTGGTTAGACCACCACCA
LOC_Os02g51790
Os.5206.1.S1_at--581--1371Chr02:31715290..31715314 (25 bp)
AGACCACCACCATCTCTAAGGGAGA
LOC_Os02g51790
Os.5206.1.S1_at--133--3811Chr02:31715393..31715417 (25 bp)
CTCCCTGTGGTTTCATTCCTTATAA
LOC_Os02g51790
Os.5206.1.S1_at--711--2051Chr02:31715436..31715460 (25 bp)
ACATTAACTGATTTCCAAGTCCTTG
LOC_Os02g51790
Os.5206.1.S1_at--369--2831Chr02:31715474..31715498 (25 bp)
AAGTTCTATTACCAATTCCATTTGT
LOC_Os02g51790
Os.5206.1.S1_at--308--2571Chr02:31715560..31715584 (25 bp)
AACTGTGCTTAACGAGTGTATGCTA
LOC_Os02g51790
Target Sequence 
AGATTCGGGCCATGCCGACGGAGAAGATCGAGGAGGAAGTGGTGGACCTGAAGGGGGAGCTCTTCATGCTCCGCCTCAAG
CGCTCCGCGCGCCAGGAGTTCAAATCCAGCGAGTTCGGCCGCATGCGCAAGAGGATTGCTCGTATGCTGACTGTCAAAAG
AGAACGGGAAATTGAACAAGGAATCAACAAGAGATTGTCTAGGAAGCTTGACAGGAAATGGAAGCAAAGCATCGTGGTTA
GACCACCACCATCTCTAAGGGAGAACAAGGAGGAATAGAGAGCCACAAAAGCAGACAGTCTGTAGAAGTCATTTCATGCA
TGTCTTGAAGGAAGGTTTCTTTCTCCCTGTGGTTTCATTCCTTATAATGGATTGATATGTAATTCACATTAACTGATTTC
CAAGTCCTTGCTGTCAAAACCAAAAGTTCTATTACCAATTCCATTTGTGTAAATTTCAGTTTATTCAAAATGTGTTGTCC
ATATANGCACTTATATTACTGATATATGAAACTGTGCTTAACGAGTGTATGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis