Browse Element(s) Details


Os.52928.1.S1_at

Description gb:AK105696.1
DB_XREF= gi:32990905
TID=Os.52928.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C11, full insert sequence.
FL= gb:AK105696.1 gb:AK069965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5181011/11chloroplast outer membrane translocon subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51780Os.9483.1.S1_at11/112+31705484..31710525RNB-like protein, expressed
LOC_Os02g51790Os.5206.1.S2_at11/112+31713856..3171663050S ribosomal protein L29, chloroplast precursor, putative, expressed
LOC_Os02g51790Os.5206.1.S1_at10/112+31713856..3171663050S ribosomal protein L29, chloroplast precursor, putative, expressed
LOC_Os02g51810Os.52928.1.S1_at11/112+31733624..31741499chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os02g51820Os.30724.2.S1_at11/112+31741843..31743657expressed protein
LOC_Os02g51830Os.30724.1.S1_at11/112+31743490..31748587histidyl-tRNA synthetase family protein, expressed
LOC_Os02g51840OsAffx.24829.1.S1_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_s_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_at6/112+31748793..31752491expressed protein
LOC_Os02g51850Os.22612.1.A1_at11/112+31753149..31755693adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os02g51860Os.24364.1.A1_s_at11/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51860OsAffx.12602.1.S1_at10/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51870OsAffx.12603.1.S1_at11/112+31764824..31765393hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004040molecular_functionamidase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52928.1.S1_at--1152--1351Chr02:31739345..31739369 (25 bp)
AGAGCAGCTGCCTATCTGGAACTTG
LOC_Os02g51810
Os.52928.1.S1_at--317--7391Chr02:31739476..31739500 (25 bp)
GTGAGCAGGCCTTACTCTTGGATAA
LOC_Os02g51810
Os.52928.1.S1_at--345--5971Chr02:31740174..31740198 (25 bp)
GAGAAGCTGTTCTGAATCACCAAGA
LOC_Os02g51810
Os.52928.1.S1_at--45--2471Chr02:31741160..31741184 (25 bp)
AACAAAGCAGGCCTTTTGGCAGAGA
LOC_Os02g51810
Os.52928.1.S1_at--1157--3731Chr02:31741202..31741226 (25 bp)
CTAAGGTGATACGAGCAGCTGCCAT
LOC_Os02g51810
Os.52928.1.S1_at--338--5071Chr02:31741216..31741240 (25 bp)
GCAGCTGCCATCTCGTGAGTTTTTG
LOC_Os02g51810
Os.52928.1.S1_at--1053--6211Chr02:31741242..31741266 (25 bp)
GAGGCGCCTGATTGTACGCAATTTT
LOC_Os02g51810
Os.52928.1.S1_at--182--171Chr02:31741262..31741286 (25 bp)
ATTTTGATCGACTGAGGAAGCTCCT
LOC_Os02g51810
Os.52928.1.S1_at--271--10631Chr02:31741286..31741310 (25 bp)
TTCGCTCCGTTTGTTACTTGTGTTG
LOC_Os02g51810
Os.52928.1.S1_at--353--1211Chr02:31741330..31741354 (25 bp)
AGTTTGCCGCGGTGCTGAGTCGTCA
LOC_Os02g51810
Os.52928.1.S1_at--680--7131Chr02:31741475..31741499 (25 bp)
GTCATAATGATATCGTGCCTTGTAT
LOC_Os02g51810
Target Sequence 
AGAGCAGCTGCCTATCTGGAACTTGGCCGTTATAAGCAAGCTGAAGCAGATTGTGAGCAGGCCTTACTCTTGGATAAAAA
GAATGTTAAAGCATATCTACGACGAGGGATCGCAAGAGAAGCTGTTCTGAATCACCAAGAAGCTCTTCAAGATATCAGGC
ATGCTTTAGCTTTGGAGCCACAGAACAAAGCAGGCCTTTTGGCAGAGAGAAGGCTGCAGAAAAAACTAAGGTGATACGAG
CAGCTGCCATCTCGTGAGTTTTTGAGAGGCGCCTGATTGTACGCAATTTTGATCGACTGAGGAAGCTCCTTCGCTCCGTT
TGTTACTTGTGTTGCCCGTGTGAGGCATTGAGCAGTTTGCCGCGGTGCTGAGTCGTCATCAGTTGATGTTCTCACGAATT
CGAGAACTTTGGCGTGTTTGTATAGGAATTAAGCCACATATTTTGGCCAGGCGATGACGGAAGAAACATTTGGNTAGATA
TATTTTGTACAAAATCATGTCATAATGATATCGTGCCTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis