Browse Element(s) Details


Os.30724.1.S1_at

Description gb:AK066904.1
DB_XREF= gi:32976922
TID=Os.30724.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.30724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092L05, full insert sequence.
FL= gb:AK099136.1 gb:AK066904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5183011/11histidyl-tRNA synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51810Os.52928.1.S1_at11/112+31733624..31741499chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os02g51820Os.30724.2.S1_at11/112+31741843..31743657expressed protein
LOC_Os02g51830Os.30724.1.S1_at11/112+31743490..31748587histidyl-tRNA synthetase family protein, expressed
LOC_Os02g51840OsAffx.24829.1.S1_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_s_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_at6/112+31748793..31752491expressed protein
LOC_Os02g51850Os.22612.1.A1_at11/112+31753149..31755693adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os02g51860Os.24364.1.A1_s_at11/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51860OsAffx.12602.1.S1_at10/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51870OsAffx.12603.1.S1_at11/112+31764824..31765393hypothetical protein
LOC_Os02g51880Os.53073.1.S1_at11/112+31767487..31770532amine oxidase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006427biological_processhistidyl-tRNA aminoacylation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004821molecular_functionhistidine-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30724.1.S1_at--305--2891Chr02:31744105..31744129 (25 bp)
AAGGGTCTGTTACCTGATCTGTCAC
LOC_Os02g51830
Os.30724.1.S1_at--607--6311Chr02:31744072..31744096 (25 bp)
GATGACATTGTCTTCCCATTGGATG
LOC_Os02g51830
Os.30724.1.S1_at--827--1531Chr02:31744031..31744055 (25 bp)
AGCATGTAGTGTTGCTTCCTCTCTG
LOC_Os02g51830
Os.30724.1.S1_at--71--7091Chr02:31743768..31743792 (25 bp)
GTCAAGGCTGGCGAACTACAATAAG
LOC_Os02g51830
Os.30724.1.S1_at--106--9071Chr02:31743726..31743750 (25 bp)
TGCTTCTAATCCTAGGCCTTTTTAC
LOC_Os02g51830
Os.30724.1.S1_at--717--5691Chr02:31743692..31743716 (25 bp)
GACTTCATCCACTAAAGCTCTGTTG
LOC_Os02g51830
Os.30724.1.S1_at--562--7031Chr02:31743631..31743655 (25 bp)
GTACAACTCGTAGGCACTCCATTAT
LOC_Os02g51830
Os.30724.1.S1_at--464--5271Chr02:31743596..31743620 (25 bp)
GAATGCCTTTATTTGCTACTAGATG
LOC_Os02g51830
Os.30724.1.S1_at--491--3571Chr02:31743578..31743602 (25 bp)
CTAGATGATTTACACGTTTGCCGAA
LOC_Os02g51830
Os.30724.1.S1_at--576--1051Chr02:31743554..31743578 (25 bp)
AGGTGATTGTATCTTCGTTTGCAGA
LOC_Os02g51830
Os.30724.1.S1_at--791--4011Chr02:31743539..31743563 (25 bp)
CGTTTGCAGATACCCTTACACTATA
LOC_Os02g51830
Target Sequence 
AAGGGTCTGTTACCTGATCTGTCACGCCAAATAGATGACATTGTCTTCCCATTGGATGAGGAGCTTGAAGGGCCAGCATG
TAGTGTTGCTTCCTCTCTGCGGAGGCAAGGCAGAAGTGTAGACCTTGTNGAAGACAAGCGTCTTAAATGGGTATTTAAGC
ATGCTGAGAGGATAAATGCTGGTAGGCTGATATTGGTCGGAAAATCCGAGTGGGAGCGAGGTATGGTTCGTGTGAAGATA
TTATCAACCAGAGAAGAATTTGAGGTCAAGGCTGGCGAACTACAATAAGAGAATTTGTGAAGGTTTTGCTTCTAATCCTA
GGCCTTTTTACCTTCTTTATGACTTCATCCACTAAAGCTCTGTTGAAACACAGCGATTCATGTCATTNACACATAGGAGG
GGTACAACTCGTAGGCACTCCATTATTTTACTGATAGAATGCCTTTATTTGCTACTAGATGATTTACACGTTTGCCGAAG
GTGATTGTATCTTCGTTTGCAGATACCCTTACACTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis